View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0920-INSERTION7 (Length: 795)
Name: NF0920-INSERTION7
Description: NF0920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0920-INSERTION7 |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-169; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 337 - 743
Target Start/End: Original strand, 31595475 - 31595882
Alignment:
| Q |
337 |
ttgagtttgattgattgtatgtcctatcaaattgtataaaatgaatatttataggcaaaactattattactggccacgacatgacctacaatgtttagtc |
436 |
Q |
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|||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||| | |
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| T |
31595475 |
ttgagtttgattgattgtatgtcctatcaaattgta-aagatgagtatttataggcaaaattattattactgaccacgacatgacctacaatgtttagcc |
31595573 |
T |
|
| Q |
437 |
ttacccaactatttgtgcgggtagtgcgtaagttttctctcattgaaggggtatgtggcacccacgttcggctagtag--gtccaattcacaacaagata |
534 |
Q |
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|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||| |
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| T |
31595574 |
ttacccaactatttgtgcaggtagtgcgtaagctttctctcattgaaggggtatgtggcacccacgttcggctagtagctgtccatttcacaacatgata |
31595673 |
T |
|
| Q |
535 |
tgttgacaaagttcaatgtgtgcaacctcccttagaatgtgtatttgtgtccatcactccttttgtttagtgtcactttaaataaagagcacgcgttagt |
634 |
Q |
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|||||||||||||||||||| |||| |||||||| ||||||| ||||||||||||| |||||||||||||||||||| |||||| |||||| |||||||| |
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| T |
31595674 |
tgttgacaaagttcaatgtgcgcaaactcccttaaaatgtgtctttgtgtccatcattccttttgtttagtgtcactataaatacagagcatgcgttagt |
31595773 |
T |
|
| Q |
635 |
tgcctcactatccaatttcacttattgttgactaagtctgatgttctaaagatccatgtattatttggtagactcgtcaaagaaataactgactcttatt |
734 |
Q |
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||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
31595774 |
tgcctcaatgtccaatttcacttagtgttgactaagtctgatgttctaaagatccatgtattactcggtagactcgtcaaagaaataactgactcttatt |
31595873 |
T |
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| Q |
735 |
ccactgtag |
743 |
Q |
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||||||||| |
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| T |
31595874 |
ccactgtag |
31595882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 7 - 144
Target Start/End: Original strand, 31594995 - 31595132
Alignment:
| Q |
7 |
aaaactaattattaagatcttaagtatgagaagaaaaagagataaaagagctttatagctcaaatgcaagtaaagttcattggaaattatattgatttaa |
106 |
Q |
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| T |
31594995 |
aaaactacttattaagatcttaagtatgagaagaaaaagagataaaagagctttatagctaaaatgcaagtaaagttcatcggaaattatattgatttaa |
31595094 |
T |
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| Q |
107 |
atatagtcatttttgtacgcaatagttctatttataga |
144 |
Q |
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| T |
31595095 |
atatagtcatttttgtacgtaatacttctgtttataga |
31595132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 151 - 272
Target Start/End: Original strand, 31595291 - 31595412
Alignment:
| Q |
151 |
tctcaactttgatttccttatatcaaacgattagactgaagaaagaattctctctcaaatttatggattcattaataacttcagtagagcgttaaataca |
250 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||| |||| | |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31595291 |
tctcaactttgatttccttatatcaaacgattagatcggagaaaaaattttgtctcaaatttatggattcattaataatttcagtagagcgttaaataca |
31595390 |
T |
|
| Q |
251 |
atgtttttgaagtttttaacga |
272 |
Q |
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|||||||||||||||||||||| |
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| T |
31595391 |
atgtttttgaagtttttaacga |
31595412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 36572193 - 36572303
Alignment:
| Q |
16 |
tattaagatcttaagtatgagaagaaaaaga--gataaaagagctttatagctcaaatgcaagtaaagttcattggaaattatattgatttaaatatagt |
113 |
Q |
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||||||||| || ||||| |||||||||| | |||||||||| |||||| ||||| || ||||||| || |||| ||||||||||||| ||| ||||| |
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| T |
36572193 |
tattaagattttgagtataagaagaaaaaaaacgataaaagagttttataactcaagtgaaagtaaaatttattgaaaattatattgatcaaaagatagt |
36572292 |
T |
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| Q |
114 |
catttttgtac |
124 |
Q |
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|||| ||||| |
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| T |
36572293 |
gatttgtgtac |
36572303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 34 - 143
Target Start/End: Complemental strand, 1673779 - 1673670
Alignment:
| Q |
34 |
gagaagaaaaagagataaaagagctttatagctcaaatgcaagtaaagttcattggaaattatattgatttaaatatagtcatttttgtacgcaatagtt |
133 |
Q |
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||||| |||||||||||||||| |||||||||||||||| ||||||| || |||||||||||||||||| ||| || || |||| ||||| |||| || |
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| T |
1673779 |
gagaaaaaaaagagataaaagaactttatagctcaaatgaaagtaaaatttattggaaattatattgatgaaaagatggtgatttgtgtacataatactt |
1673680 |
T |
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| Q |
134 |
ctatttatag |
143 |
Q |
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| T |
1673679 |
ctatttatag |
1673670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 31989484 - 31989431
Alignment:
| Q |
26 |
ttaagtatgagaagaaaaagagataaaagagctttatagctcaaatgcaagtaa |
79 |
Q |
| |
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|||||||| || |||||||||||||||||||||| |||||||||||| |||||| |
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| T |
31989484 |
ttaagtattaggagaaaaagagataaaagagcttaatagctcaaatgaaagtaa |
31989431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 375 - 498
Target Start/End: Original strand, 23066756 - 23066883
Alignment:
| Q |
375 |
aaatgaatatttataggcaaaactattattactggcca--cgacatgacctacaatgtttagtcttacccaactatttgtgcgggtagtgcg--taagtt |
470 |
Q |
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| T |
23066756 |
aaatgagtatttatatgcaaaactcttcttattagccaaacgacaagacctacaatgtttattctgactcaactatttgtgaaggtagtgcgctttagtt |
23066855 |
T |
|
| Q |
471 |
ttctctcattgaaggggtatgtggcacc |
498 |
Q |
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||| |||| ||| ||||||||||||||| |
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| T |
23066856 |
ttccctcactgagggggtatgtggcacc |
23066883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 100
Target Start/End: Original strand, 54013 - 54085
Alignment:
| Q |
28 |
aagtatgagaagaaaaagagataaaagagctttatagctcaaatgcaagtaaagttcattggaaattatattg |
100 |
Q |
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|||||| || ||||||||||||||||||| || |||||||||||| |||||| || || | ||||||||||| |
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| T |
54013 |
aagtattaggagaaaaagagataaaagagtttaatagctcaaatgaaagtaatatttatagaaaattatattg |
54085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 537 - 567
Target Start/End: Complemental strand, 36194855 - 36194825
Alignment:
| Q |
537 |
ttgacaaagttcaatgtgtgcaacctccctt |
567 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
36194855 |
ttgacaaagttcaatgtgtgcaacctccctt |
36194825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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