View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0920-INSERTION9 (Length: 755)

Name: NF0920-INSERTION9
Description: NF0920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0920-INSERTION9
NF0920-INSERTION9
[»] chr4 (2 HSPs)
chr4 (80-755)||(32902552-32903223)
chr4 (8-89)||(32901770-32901851)


Alignment Details
Target: chr4 (Bit Score: 602; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 602; E-Value: 0
Query Start/End: Original strand, 80 - 755
Target Start/End: Original strand, 32902552 - 32903223
Alignment:
Q  80 tgatgattgattcaattttatatacaaaggaacaatctcactaacgtggagtaggatgttatttatggtcatttttggctaggaaagaagtatctcaact 179  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  32902552 tgatgattgattcaattttatata-aaaggaacaatctcactaacgtggagtaggatgttatttatggtcatttttggctaggaaagaagtatctcaagt 32902650  T
Q  180 tcgacaacaaataaatgtctaatttgtgcgaccttgagattttagagaagttaatccgtaacatgaacaactgtatgtgtgaaagtgaatttagacaaaa 279  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32902651 tcgacaacaaataaatgtttaatttgtgcgatcttgagattttagagaagttaatccgtaacatgaacaactgtatgtgtgaaagtgaatttagacaaaa 32902750  T
Q  280 tataagttttgcataaggttaaaattaatttcaatatcatgacaatatcgtcgtgactcaagaaatttttcattcaatttgtagaagtcttaggagagtt 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32902751 tataagttttgcataaggttaaaattaatttcaatatcatgacaatatcgtcgtgactcaagaaatttttcattcaatttgtagaagtcttaggagagtt 32902850  T
Q  380 gataatatgattatcttcaagactatagatctcttcctccaaactatcataaaagaacgtcgtcttcgcttcaagttgctcaacatctaggttcaaatta 479  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32902851 gataatatgattatcttcaagactatagatctcttcccccaaactatcataaaagaacgtcgtcttcgcttcaagttgctcaacatctaggttcaaatta 32902950  T
Q  480 gagactaattcaaacacagctcaaatagaaatcatctttacccatgagagattcttttcaaaatcaatatgcatgcttcccctaattaaattctttcaca 579  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32902951 gagactaattcaaacacagctcaaatagaaatcatctttacccatgagagattcttttcaaaatcaatatgcatgcttcccctaattaaattctttcaca 32903050  T
Q  580 atcaatatttgattgggagttattttgatcatatgcaattattatgtataaccatttgttcctctnnnnnnnntgtatacccatttgcgagtgtttttct 679  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||    
T  32903051 atcaatatttgattgggagttattttgatcatatgcaattattatgtataaccatttgttcctctaaaaaaaatgtatacccatttgcgagtgtttttct 32903150  T
Q  680 cccccaacaagtccaatcaaactcccatatcacttgttagattaaaatccaggggacaacaacgaatcaatgatcc 755  Q
    |||||| |||||||||||||||||| ||||||||||||||   |||||||||||| ||||||||||||||||||||    
T  32903151 cccccaccaagtccaatcaaactccgatatcacttgttag---aaaatccagggggcaacaacgaatcaatgatcc 32903223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 32901770 - 32901851
Alignment:
Q  8 atgcattcaacaagcatgcaatatatagtaccttctcaaatgtacgctacacgcaaacgtgttttcatgcaatgatgattga 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32901770 atgcattcaacaagcatgcaatatatagtaccttctcaaatgtacgctacacgcaaacgtgttttcatgcaatgatgattga 32901851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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