View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0920_high_17 (Length: 251)
Name: NF0920_high_17
Description: NF0920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0920_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 2 - 236
Target Start/End: Original strand, 9030643 - 9030877
Alignment:
| Q |
2 |
ttactctggacatatatcaaatatatatcaaaatgcaaggtgttgatagaagttctattttttcttctctcaatttgtaattgattaaaactaatagaac |
101 |
Q |
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| T |
9030643 |
ttactctggacatatatcaaatatatatcaaaatccaaggtgtggatagaagttctattttttcttctctcaatttgtaattgattaaaactaatagaac |
9030742 |
T |
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| Q |
102 |
aacaaagagtgtatgttcttgaacaaagagatattagtatctcacaaagcaaaggttcaacttctggtattccacaatacattatgcaaattgttaacag |
201 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9030743 |
aacatagagtgtatgttcttgcacaaagagatattagtatctcacaaagcaaaggttcaacttctggtattccacaatacattatgcaaattgttaacag |
9030842 |
T |
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| Q |
202 |
ttgtgtttttgggtgtgctcctgatgatgtccatc |
236 |
Q |
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| T |
9030843 |
ttgtgtttttgggtgtgctcctaatgatatccatc |
9030877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 9012964 - 9013199
Alignment:
| Q |
1 |
tttactctggacatatatcaaatatatatcaaaatgcaaggtgttgatagaagttctattttttcttctctcaatttgtaattgattaaaactaatagaa |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||| ||||||| |
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| T |
9012964 |
tttactctgggcatatatcaaatatatatcaaaatgcaaggtgtggatagaagttctattttt-cttccctcaatttgtaattgattaaaacaaatagaa |
9013062 |
T |
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| Q |
101 |
caacaaagagtgtatgttcttgaacaaagagatattagtatctcacaaagcaaaggttcaacttctggtattccacaatacattatgcaaattgttaaca |
200 |
Q |
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| T |
9013063 |
caacaaagagtgtatgttcttgcacaaagagatattagtatctcacaaaacaaaggttcaacttctggtattccacaatacattatgcaaattgttaaca |
9013162 |
T |
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| Q |
201 |
gttgtgtttttgggtgtgctcctgatgatgtccatct |
237 |
Q |
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| T |
9013163 |
cttgtgtttttggatgtgctcctaatgatatccatct |
9013199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 9021106 - 9021337
Alignment:
| Q |
1 |
tttactctggacatatatcaaatatatatcaaaatgcaaggtgttgatagaagttctattttttcttctctcaatttgtaattgattaaaactaatagaa |
100 |
Q |
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|||| ||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||| |
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| T |
9021106 |
tttaatctgggcatatataaaatatatatcaaaatgcatggtgttgatagaagttctattttt-cttctctcaatttgtaatt----aaaacaaatagaa |
9021200 |
T |
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| Q |
101 |
caacaaagagtgtatgttcttgaacaaagagatattagtatctcacaaagcaaaggttcaacttctggtattccacaatacattatgcaaattgttaaca |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| || |
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| T |
9021201 |
caacaaagagtgtatgttcttgcacaaagagatattagaatctcacaaagcaaaggttcaacttctggtattccacattacattgtgcaaattgttagca |
9021300 |
T |
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| Q |
201 |
gttgtgtttttgggtgtgctcctgatgatgtccatct |
237 |
Q |
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| T |
9021301 |
cttgtgtttttggatattctcctcatgatatccatct |
9021337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 126 - 237
Target Start/End: Complemental strand, 13046273 - 13046162
Alignment:
| Q |
126 |
aaagagatattagtatctcacaaagcaaaggttcaacttctggtattccacaatacattatgcaaattgttaacagttgtgtttttgggtgtgctcctga |
225 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||| |||||||| ||| ||||||||| | |
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| T |
13046273 |
aaagagacattagtatctcacaaagcaaaggttcaacttctggaattccacagtacattgtgcaaattgttaacacttgtgtttctggatgtgctcctta |
13046174 |
T |
|
| Q |
226 |
tgatgtccatct |
237 |
Q |
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|||| ||||||| |
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| T |
13046173 |
tgatatccatct |
13046162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 116 - 213
Target Start/End: Original strand, 8996946 - 8997045
Alignment:
| Q |
116 |
gttcttgaacaaagagatattagtatctcacaaagcaaaggttcaacttctggtattccacaatac--attatgcaaattgttaacagttgtgtttttgg |
213 |
Q |
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||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||| ||| |||||||| |
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| T |
8996946 |
gttcttgcacgaagagatattagtatctcacaaagcaaaggttcaacttctggtattccacaatacatattgtgccaattgttaacacttgcgtttttgg |
8997045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 8988726 - 8988758
Alignment:
| Q |
124 |
acaaagagatattagtatctcacaaagcaaagg |
156 |
Q |
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| T |
8988726 |
acaaagagatattagtatctcacaaagcgaagg |
8988758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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