View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0920_high_22 (Length: 204)
Name: NF0920_high_22
Description: NF0920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0920_high_22 |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 3e-96; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 14534530 - 14534719
Alignment:
| Q |
1 |
attgtgggttaaattacaaaaataattaccacgaaaacaacctggaatccttgttaaaataatcacttaagtcgacgaatcaagcattcactttcacggt |
100 |
Q |
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| T |
14534530 |
attgtgggttaaattacaaaaataattaccacgaaaacaacctggaatctgtgttaaaataatcacttaagtcgacgaatcaagcattcactttcacggt |
14534629 |
T |
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| Q |
101 |
caaaccaaagtatgctattcggtaaaattcataacacatatatcaatgtttaagacctatagtacctgccagtcgaagatgtgatgatgt |
190 |
Q |
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| T |
14534630 |
taaaccaaagtatgctattcggtaaaattcataacacatatatcaatgtttaagacctatagtacctgccagtcgaagatgtgatgatgt |
14534719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 14530181 - 14530370
Alignment:
| Q |
1 |
attgtgggttaaattacaaaaataattaccacgaaaacaacctggaatccttgttaaaataatcacttaagtcgacgaatcaagcattcactttcacggt |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14530181 |
attgtgggttaaattacaaaaataataaccacgaaaacaacctggaatccttgttaaaataatcacttaagtcgacgaatcaagcattcactttcacggt |
14530280 |
T |
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| Q |
101 |
caaaccaaagtatgctattcggtaaaattcataacacatatatcaatgtttaagacctatagtacctgccagtcgaagatgtgatgatgt |
190 |
Q |
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| T |
14530281 |
caaaccaaagtatgctattcggtaaaattcataacacatatatcgatgtttaaaacctatactacctgccagtcaaagatgtgatgatgt |
14530370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 3 - 190
Target Start/End: Original strand, 14517020 - 14517207
Alignment:
| Q |
3 |
tgtgggttaaattacaaaaataattaccacgaaaacaacctggaatccttgttaaaataatcacttaagtcgacgaatcaagcattcactttc-acggtc |
101 |
Q |
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| T |
14517020 |
tgtggattaaatta-aaaaataataataaccaaaacaacttggaagcctagctaaaataataacttaagtcgacgaatcagacattcactttttacggtt |
14517118 |
T |
|
| Q |
102 |
aaaccaaagtatgctattcggtaaaattcataacacatatatcaatgtttaagacctatagtacctgccagtcgaagatgtgatgatgt |
190 |
Q |
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||| ||||||||| |||| ||||| |||||||||| |||||||||||||| |||| ||||||||||| || ||||||||||||| |
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| T |
14517119 |
gaacaaaagtatgccattcatcaaaatatataacacatacatcaatgtttaagaactatgctacctgccagttgaggatgtgatgatgt |
14517207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 2 - 99
Target Start/End: Complemental strand, 37339935 - 37339837
Alignment:
| Q |
2 |
ttgtgggttaaattacaaaaataattaccacgaaaacaacctggaatccttgttaaaataatcacttaagtcgacgaatcaagcattca-ctttcacgg |
99 |
Q |
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||||||||||||||||||| | |||||| |||||||||||||| ||||||||||||||| ||||| || ||||||||| ||||||| ||||||||| |
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| T |
37339935 |
ttgtgggttaaattacaaacaaaattactggcaaaacaacctggaagccttgttaaaataataacttaggttgacgaatcaggcattcacctttcacgg |
37339837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 37328700 - 37328604
Alignment:
| Q |
1 |
attgtgggttaaattacaaaaataattaccacgaaaacaacctggaatccttgttaaaataatcacttaagtcgacgaatcaagcattcact-ttcacgg |
99 |
Q |
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||||||||||||||||| ||| ||| ||| |||||||||||||| | |||||||||| || ||||| || || |||||| ||||||||| ||||||| |
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| T |
37328700 |
attgtgggttaaattactaaa----ttatcaccaaaacaacctggaagctttgttaaaattataacttaggttgatgaatcaggcattcactcttcacgg |
37328605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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