View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0920_high_5 (Length: 410)
Name: NF0920_high_5
Description: NF0920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0920_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 80 - 237
Target Start/End: Original strand, 22255683 - 22255840
Alignment:
| Q |
80 |
gaggagcagagattttatgatggtctgtcattactatattatttctttgcattgtcttcaacctcagattttaaaacctacaattaacctacatcaccat |
179 |
Q |
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|||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
22255683 |
gaggagcacatattttatgatggtctgtcattattatattatttctttgcattgtcttcaacctcagattttaaaacctgcaattaacctacaccaccat |
22255782 |
T |
|
| Q |
180 |
caataactttaacctctattgcatgtccaattcaagcctctcttgaattagaacaaat |
237 |
Q |
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|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
22255783 |
caataactttaacctctattgcatgtccaatttgagcctctcttgaattagaacaaat |
22255840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 80 - 237
Target Start/End: Complemental strand, 38150822 - 38150665
Alignment:
| Q |
80 |
gaggagcagagattttatgatggtctgtcattactatattatttctttgcattgtcttcaacctcagattttaaaacctacaattaacctacatcaccat |
179 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||| |
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| T |
38150822 |
gaggagcacagattttatgatggtctgccattactatattatttctttgcattgtcttcaacctcagattttaaaaccagcaattaatctacaccaccat |
38150723 |
T |
|
| Q |
180 |
caataactttaacctctattgcatgtccaattcaagcctctcttgaattagaacaaat |
237 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38150722 |
caataactttaacctctattgcatgtccaattcgagcctctcttgaattagaacaaat |
38150665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 7e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 80 - 221
Target Start/End: Complemental strand, 5433671 - 5433529
Alignment:
| Q |
80 |
gaggagcagagattttatgatggtctgtcattactatattatttctttgcatt-gtcttcaacctcagattttaaaacctacaattaacctacatcacca |
178 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||| ||||| |
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| T |
5433671 |
gaggagcacatattttatgatggtctgtcattactatattatttctttgcatttgtcttcaacctcagattttaaaacgtgcaattaacctacaccacca |
5433572 |
T |
|
| Q |
179 |
tcaataactttaacctctattgcatgtccaattcaagcctctc |
221 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5433571 |
tcaataactttaacctctattgcatgtccaattcgagcctctc |
5433529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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