View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0920_high_9 (Length: 352)
Name: NF0920_high_9
Description: NF0920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0920_high_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 30 - 339
Target Start/End: Original strand, 41821111 - 41821420
Alignment:
| Q |
30 |
agaagaagccttatgaggagaaataccaagctgaaaaagaggcttatttacaagtaattacaaaggaaaaacgtgaaattgaggcaatgaaactcttaga |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41821111 |
agaagaagccttatgaggagaaataccaagctgaaaaagaggcttatttgcaagtaattacaaaggaaaaacgtgaaattgaggcaatgaaactcttaga |
41821210 |
T |
|
| Q |
130 |
agaggaacagaagcagaagactgctatggaattgcttgaacagtttatgcaattcaaacaagatgcagaaaaggagagcaagaagaacaagaaagagaag |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41821211 |
agaggaacagaagcagaagactgctatggaattgcttgaacagtttatgcaattcaaacaagatgcagaaaaggagagcaagaagaacaagaaagagaag |
41821310 |
T |
|
| Q |
230 |
gatccattgaaaccaaagcatcctatgtcagcttttttcctgtttactaatgatagaagagcagccattcttgcagacaacaagggtatcttggaggtaa |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
41821311 |
gatccattgaaaccaaagcatcctatgtcagcttttttcctgtttactaatgatagaagagcagctattcttgcagacaacaagggtatcttggaggtaa |
41821410 |
T |
|
| Q |
330 |
ttgatgatat |
339 |
Q |
| |
|
|||||||||| |
|
|
| T |
41821411 |
ttgatgatat |
41821420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 882 times since January 2019
Visitors: 6705