View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0920_low_1 (Length: 664)
Name: NF0920_low_1
Description: NF0920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0920_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 572; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 29 - 648
Target Start/End: Original strand, 6095086 - 6095705
Alignment:
| Q |
29 |
aataacaataggctcaaacacagattggttaaaaaccagttggttcctgtgactccaaatcagccagagggagtagcagaataattgttgggcacgggtg |
128 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6095086 |
aataacaataggctcaaacacagattggttaaaaactagttggttcctatgactccaaatcagccagagggagtagcagaataattgttgggcacgggtg |
6095185 |
T |
|
| Q |
129 |
tccggcgctgacagccacactttcatccacgatatcaactccaattggtccggtacatggatcccaagaggggaagagaaccagactgctaaggcagcag |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6095186 |
tccggcgctgacagccacactttcatccacgatatcaagtccaattggtccggtacatggatcccaagaggggaagagaaccagactgctaaggcagcag |
6095285 |
T |
|
| Q |
229 |
ggcagcgcataaaaaggtgatccgagtcttctattaaggagttacaaagaggacaactcatatccagggatatacctttcttacccaaattacttctagt |
328 |
Q |
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|||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6095286 |
ggcagcgcataaaaaggtgatctgagtcttctattgagaagttacaaagaggacaactcatatccagggatatacctttcttacccaaattacttctagt |
6095385 |
T |
|
| Q |
329 |
tggaaggatattttttgccaacccccataagaaattttgtgcacttttagggacaggaatactccaaatacgcttccatatctcataattgttgctattt |
428 |
Q |
| |
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||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
6095386 |
tggaaggatattttttgtcaacctccataagaaattttgtgcacttttagggacgggagtactccaaatacgcttccatatctcagaattgttgctattt |
6095485 |
T |
|
| Q |
429 |
gaggattcagcctgctccgagtttctatcctcacacattgcatgatgcgccgatctcacagagtagacaccattcttttcccaatgccatatgattttgt |
528 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6095486 |
gaggattcagcctgctccgagtttctatcctcacacattgcatgatgcgccgatctcacagagtagacaccattcttttcccaatgccatatgattttgt |
6095585 |
T |
|
| Q |
529 |
ctgttggacgcctaacagataaagggatgcttatgattttcctggctgtgtagttgttgaacctgctaaaaataagaccccggtcccactgatttgtatc |
628 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
6095586 |
ctgttggacgcctaacagataaagggatgcttatgattttcctggctgtgtagttgttgaacctactaaaaataagaccccggtcccactgatttgtatc |
6095685 |
T |
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| Q |
629 |
cctatcaattaattccgcaa |
648 |
Q |
| |
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|||||||||||||||||||| |
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| T |
6095686 |
cctatcaattaattccgcaa |
6095705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 571; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 29 - 651
Target Start/End: Complemental strand, 32805831 - 32805209
Alignment:
| Q |
29 |
aataacaataggctcaaacacagattggttaaaaaccagttggttcctgtgactccaaatcagccagagggagtagcagaataattgttgggcacgggtg |
128 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32805831 |
aataacaataggctcaaacacagattggttaaaaaccagttggttcctgtgactccaaatcagccagagggagtagcagaataattgttgggcacgggtg |
32805732 |
T |
|
| Q |
129 |
tccggcgctgacagccacactttcatccacgatatcaactccaattggtccggtacatggatcccaagaggggaagagaaccagactgctaaggcagcag |
228 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32805731 |
tccggcgctgacagccacactttcatccacgatatcaagttcaattggttcggtacatggatcccaagaggggaagagaaccagactgctaaggcagcag |
32805632 |
T |
|
| Q |
229 |
ggcagcgcataaaaaggtgatccgagtcttctattaaggagttacaaagaggacaactcatatccagggatatacctttcttacccaaattacttctagt |
328 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32805631 |
ggcagcgcataaaaaggtgatccgagtcttctattgaggagttacaaagaggacaactcatatccagggatatacctttcttacccaaattacttctagt |
32805532 |
T |
|
| Q |
329 |
tggaaggatattttttgccaacccccataagaaattttgtgcacttttagggacaggaatactccaaatacgcttccatatctcataattgttgctattt |
428 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||| |||||||||||||| |
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|
| T |
32805531 |
tggaaggatattttttgccaacctccataagaaattttgtgcacttttagggacgggaatgctccaaatacgcttccaaatctcagaattgttgctattt |
32805432 |
T |
|
| Q |
429 |
gaggattcagcctgctccgagtttctatcctcacacattgcatgatgcgccgatctcacagagtagacaccattcttttcccaatgccatatgattttgt |
528 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32805431 |
gaggattcagcctgctctgagtttctatcctcacacattgcatgatgcgccgatctcacagagtagacaccattcttttcccaatgccatatgattttgt |
32805332 |
T |
|
| Q |
529 |
ctgttggacgcctaacagataaagggatgcttatgattttcctggctgtgtagttgttgaacctgctaaaaataagaccccggtcccactgatttgtatc |
628 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32805331 |
ctgttggacgcctaacagataaagggatgcttatgattttcctggctatgtagttattgaacctgctaaaaataagaccccggtcccactgatttgtatc |
32805232 |
T |
|
| Q |
629 |
cctatcaattaattccgcaacag |
651 |
Q |
| |
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||||||||||||||| ||||||| |
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|
| T |
32805231 |
cctatcaattaattctgcaacag |
32805209 |
T |
|
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