View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0920_low_12 (Length: 357)
Name: NF0920_low_12
Description: NF0920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0920_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 27 - 184
Target Start/End: Original strand, 22255683 - 22255840
Alignment:
| Q |
27 |
gaggagcacagattttatgatggtctgtcattactatattatttctttgcattgtcttcaacctcagattttaaaacctacaattaacctacatcaccat |
126 |
Q |
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|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
22255683 |
gaggagcacatattttatgatggtctgtcattattatattatttctttgcattgtcttcaacctcagattttaaaacctgcaattaacctacaccaccat |
22255782 |
T |
|
| Q |
127 |
caataactttaacctctattgcatgtccaattcaagcctctcttgaattagaacaaat |
184 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
22255783 |
caataactttaacctctattgcatgtccaatttgagcctctcttgaattagaacaaat |
22255840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 27 - 184
Target Start/End: Complemental strand, 38150822 - 38150665
Alignment:
| Q |
27 |
gaggagcacagattttatgatggtctgtcattactatattatttctttgcattgtcttcaacctcagattttaaaacctacaattaacctacatcaccat |
126 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||| |
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| T |
38150822 |
gaggagcacagattttatgatggtctgccattactatattatttctttgcattgtcttcaacctcagattttaaaaccagcaattaatctacaccaccat |
38150723 |
T |
|
| Q |
127 |
caataactttaacctctattgcatgtccaattcaagcctctcttgaattagaacaaat |
184 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38150722 |
caataactttaacctctattgcatgtccaattcgagcctctcttgaattagaacaaat |
38150665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 27 - 168
Target Start/End: Complemental strand, 5433671 - 5433529
Alignment:
| Q |
27 |
gaggagcacagattttatgatggtctgtcattactatattatttctttgcatt-gtcttcaacctcagattttaaaacctacaattaacctacatcacca |
125 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||| ||||| |
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| T |
5433671 |
gaggagcacatattttatgatggtctgtcattactatattatttctttgcatttgtcttcaacctcagattttaaaacgtgcaattaacctacaccacca |
5433572 |
T |
|
| Q |
126 |
tcaataactttaacctctattgcatgtccaattcaagcctctc |
168 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5433571 |
tcaataactttaacctctattgcatgtccaattcgagcctctc |
5433529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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