View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0920_low_15 (Length: 351)
Name: NF0920_low_15
Description: NF0920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0920_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 57 - 310
Target Start/End: Original strand, 49771805 - 49772058
Alignment:
| Q |
57 |
gttttttctatagtcacagtgaaattcaccggtgtatacttatatgcatgcatttttattacagcatgaaatcctcatggctcttagcacatgtttctcc |
156 |
Q |
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| T |
49771805 |
gttttttctatagtcagagtgaaattcaccggagtatacttatatgcatgcatttttattacagcatgaaatcctcatggctcttagcacatgtttctcc |
49771904 |
T |
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| Q |
157 |
taaaacccttggaaatcatgcaaagtgatatccaaaattaactatccatcttttgtgaatgccattgtattaagaagctactctgctttaagtatggtta |
256 |
Q |
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| T |
49771905 |
taaaacccttggatatcatgcaaagtgatatccaaaattaactatccatcttttgtgaatgccattgtattaagaagctactctgcttcaagtatggtta |
49772004 |
T |
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| Q |
257 |
cacttatttttgtactcatttttaagcaaagaatcaccttgacctttttacata |
310 |
Q |
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| T |
49772005 |
cacttatttttgtactaatttttaagcaaagaatcaccttgacctttttacata |
49772058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 137 - 310
Target Start/End: Complemental strand, 8005455 - 8005291
Alignment:
| Q |
137 |
ctcttagcacatgtttctcctaaaacccttggaaatcatgcaaagtgatatccaaaattaactatccatcttttgtgaatgccattgtattaagaagcta |
236 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||| | |||||||| ||||||||||||||||||||| | |||| ||||||||||| |
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| T |
8005455 |
ctctgagcacatgtttctcctaaaacccttggatatcatgcgatgtgatatcgaaaattaactatccatcttttataaatg--------ttaagaagcta |
8005364 |
T |
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| Q |
237 |
ctctgctttaagtatggttacacttatttttgtactcatttttaagcaaagaatcaccttgacctttttacata |
310 |
Q |
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| T |
8005363 |
ctctgcttcaaacatagttacacttgtttttgta-ttaattttaaggaaagaatcaccttgacctttttacata |
8005291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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