View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0920_low_2 (Length: 601)
Name: NF0920_low_2
Description: NF0920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0920_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 446; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 96 - 573
Target Start/End: Complemental strand, 6399956 - 6399479
Alignment:
| Q |
96 |
aaagcttcatggtagcttttcagccaagccaacatctccgcgaaaaaatatagccgaacagaacagcttcaagtcaagacaaacatcgaacgctgaaatg |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| | |||||||| ||||||||| |
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| T |
6399956 |
aaagcttcatggtagcttttcagccaagccaatatctccgcgaaaaaatatagccgaacagaacagcttcaagttgagagagacatcgaatgctgaaatg |
6399857 |
T |
|
| Q |
196 |
agtttccaaccaaagaaagatgaaatgaaatgggtgtttgagaaattcgacacaaacaaagatggcaagattagtctggaagagtataaagcagctgcaa |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6399856 |
agtttccaaccaaagaaagatgaaatgaaatgggtgtttgagaaattcgacaaaaacaaagatggcaagattagtctggaagagtataaagcagctgcaa |
6399757 |
T |
|
| Q |
296 |
aagctttggataaggggattatttgtgacaatgatgcagtgaaagcatttaaagcaatggactctgacaaagatggcttcatagactttaaagagtttat |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6399756 |
aagctttggataaggggattatttgtgacaatgatgcagtgaaagcatttaaagcaatggactctgacaaagatggcttcatagactttaaagagtttat |
6399657 |
T |
|
| Q |
396 |
ggaaatgttcaatggagagggtagtaagataaaagaagaagatattaagagtgcttttcaagtatttgatataaatggtgatgggaaaattagtgctgag |
495 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6399656 |
ggaaatgttcaatggagaaggtagtaagataaaagaagaagatattaagagtgcttttcaagtatttgatataaatggtgatgggaaaattagtgctgag |
6399557 |
T |
|
| Q |
496 |
gaattgtctcaaatatttaagaggttaggagagagttgtagccttagtgcttgtaagaaaatggtgaaaggggttgat |
573 |
Q |
| |
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| T |
6399556 |
gaattgtctcaaatatttaagaggttaggagagagttgtagccttagtgcttgtaagaaaatggtgaaaggggttgat |
6399479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 96 - 573
Target Start/End: Original strand, 6412546 - 6413023
Alignment:
| Q |
96 |
aaagcttcatggtagcttttcagccaagccaacatctccgcgaaaaaatatagccgaacagaacagcttcaagtcaagacaaacatcgaacgctgaaatg |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| | |||||||| ||||||||| |
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| T |
6412546 |
aaagcttcatggtagcttttcagccaagccaatatctccgcgaaaaaatatagccgaacagaacagcttcaagttgagagagacatcgaatgctgaaatg |
6412645 |
T |
|
| Q |
196 |
agtttccaaccaaagaaagatgaaatgaaatgggtgtttgagaaattcgacacaaacaaagatggcaagattagtctggaagagtataaagcagctgcaa |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6412646 |
agtttccaaccaaagaaagatgaaatgaaatgggtgtttgagaaattcgacaaaaacaaagatggcaagattagtctggaagagtataaagcagctgcaa |
6412745 |
T |
|
| Q |
296 |
aagctttggataaggggattatttgtgacaatgatgcagtgaaagcatttaaagcaatggactctgacaaagatggcttcatagactttaaagagtttat |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6412746 |
aagctttggataaggggattatttgtgacaatgatgcagtgaaagcatttaaagcaatggactctgacaaagatggcttcatagactttaaagagtttat |
6412845 |
T |
|
| Q |
396 |
ggaaatgttcaatggagagggtagtaagataaaagaagaagatattaagagtgcttttcaagtatttgatataaatggtgatgggaaaattagtgctgag |
495 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6412846 |
ggaaatgttcaatggagaaggtagtaagataaaagaagaagatattaagagtgcttttcaagtatttgatataaatggtgatgggaaaattagtgctgag |
6412945 |
T |
|
| Q |
496 |
gaattgtctcaaatatttaagaggttaggagagagttgtagccttagtgcttgtaagaaaatggtgaaaggggttgat |
573 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6412946 |
gaattgtctcaaatatttaagaggttaggagagagttgtagccttagtgcttgtaagaaaatggtgaaaggggttgat |
6413023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 96 - 580
Target Start/End: Original strand, 6409803 - 6410284
Alignment:
| Q |
96 |
aaagcttcatggtagcttttcagccaagccaacatctccgcgaaaaaatatagccgaacagaacagcttcaagtcaagacaaacatcgaacgctgaaatg |
195 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||| | ||||||| | |||||| |
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|
| T |
6409803 |
aaagtttcatggtagcttttcagccaagccaacatctccgcgaaaaaatatagctcaaaagaacagcttcaagttgagagagacatcgagtaccgaaatg |
6409902 |
T |
|
| Q |
196 |
agtttccaaccaaagaaagatgaaatgaaatgggtgtttgagaaattcgacacaaacaaagatggcaagattagtctggaagagtataaagcagctgcaa |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6409903 |
agtttccaaccaaagaaagatgaaatgaaatgggtgtttgagaaatttgacacaaacaaagatggcaagattagtctggaagagtataaagcagctgcaa |
6410002 |
T |
|
| Q |
296 |
aagctttggataaggggattatttgtgacaatgatgcagtgaaagcatttaaagcaatggactctgacaaagatggcttcatagactttaaagagtttat |
395 |
Q |
| |
|
|| ||||||||||||||||| | || ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
6410003 |
aatctttggataaggggattg---gggatcctgatgcagtgaaagcatttaacgtgatggactctgacaaagatggcttcatagactttaaagagttcat |
6410099 |
T |
|
| Q |
396 |
ggaaatgttcaatggagagggtagtaagataaaagaagaagatattaagagtgcttttcaagtatttgatataaatggtgatgggaaaattagtgctgag |
495 |
Q |
| |
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|||||||||||||||||| | ||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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|
| T |
6410100 |
ggaaatgttcaatggagaaaacaataagataaaagaagaggagattaagagtgcttttcaagtatttgatataaatggagatgggaaaatcagtgctgag |
6410199 |
T |
|
| Q |
496 |
gaattgtctcaaatatttaagaggttaggagagagttgtagccttagtgcttgtaagaaaatggtgaaaggggttgatgatgatg |
580 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||| ||||| |
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|
| T |
6410200 |
gaattgtctcaaatatttaagaggttaggagagagttgcagccttagtgcttgtaagaaaatggtgaaaggtgtcgatggtgatg |
6410284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 174 - 413
Target Start/End: Complemental strand, 6405494 - 6405258
Alignment:
| Q |
174 |
acaaacatcgaacgctgaaatgagtttccaaccaaagaaagatgaaatgaaatgggtgtttgagaaattcgacacaaacaaagatggcaagattagtctg |
273 |
Q |
| |
|
|||||||| ||| || ||| |||||||||||| ||||||||||||||||||| |||| || ||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
6405494 |
acaaacattgaatgccgaactgagtttccaacaaaagaaagatgaaatgaaacgggttttcgagaaattcgacacaaacaaagatggcaatattagtttg |
6405395 |
T |
|
| Q |
274 |
gaagagtataaagcagctgcaaaagctttggataaggggattatttgtgacaatgatgcagtgaaagcatttaaagcaatggactctgacaaagatggct |
373 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | | || | ||||||||||||||||||||| || ||||||| |||||||||||| | |
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|
| T |
6405394 |
gaagagtataaagcagctgcaaaagctttggataagggg---gtaggggatactgatgcagtgaaagcatttaaggccatggactatgacaaagatggat |
6405298 |
T |
|
| Q |
374 |
tcatagactttaaagagtttatggaaatgttcaatggaga |
413 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6405297 |
tcatagactttagagagtttatggaaatgttcaatggaga |
6405258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 480 - 543
Target Start/End: Complemental strand, 6403072 - 6403009
Alignment:
| Q |
480 |
gaaaattagtgctgaggaattgtctcaaatatttaagaggttaggagagagttgtagccttagt |
543 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6403072 |
gaaaattagtgctgatgaattgtctcaaatatttaagaggttaggagagagttgtagccttagt |
6403009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 48912735 - 48912660
Alignment:
| Q |
4 |
tgcatgtttagctttttcaccaaacgctcgagggtgttgtctgattttatcagattcatcaacacagtacatcaat |
79 |
Q |
| |
|
||||||||||||||| || |||||| |||||| |||||||||||||| |||| ||||||| ||| || ||||||| |
|
|
| T |
48912735 |
tgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaat |
48912660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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