View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0920_low_20 (Length: 289)
Name: NF0920_low_20
Description: NF0920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0920_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 138; Significance: 4e-72; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 29 - 174
Target Start/End: Complemental strand, 45181845 - 45181700
Alignment:
| Q |
29 |
agtactctaatagtaatacacaaccatgttgatctgtttcattaaacaattatgttttgccttttaagattttcagatggaacctacaaattataatcag |
128 |
Q |
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| T |
45181845 |
agtactctaatagtaatacacaaccatgttgatctgtttcattaaacaattatgttttgccttttaagattttcagatggaacgtacaaattataatcag |
45181746 |
T |
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| Q |
129 |
taattacctctatcaacgtatgcttacttaatttacctacttttac |
174 |
Q |
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| T |
45181745 |
taattacctctatcaacgtatgcttacttgatttacctacttttac |
45181700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 65 - 252
Target Start/End: Complemental strand, 45174927 - 45174745
Alignment:
| Q |
65 |
tttcattaaacaattatgttttgcctttt-aagattttcagatggaacctacaaattataatcagtaattacctctatcaac-gtatgcttacttaattt |
162 |
Q |
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| T |
45174927 |
tttcatcaatcaattatgtttttcctttttaagattttcagttggaacctacaaattgcaatc--tagctacctctctaaaccgcttgctgacttaattt |
45174830 |
T |
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| Q |
163 |
acctacttttacaaaggactatattatattgcaactaggtggtaccgtgcacctgaactatgtggttcttttttcacaaaagtaagtttt |
252 |
Q |
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| T |
45174829 |
acctacttttaccaaggactatgtt-----gcaactaggtggtaccgtgcacctgaactatgtggttcttttttctcaaaagtaagtttt |
45174745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 205 - 274
Target Start/End: Complemental strand, 45181702 - 45181633
Alignment:
| Q |
205 |
taccgtgcacctgaactatgtggttcttttttcacaaaagtaagttttttgtttgacatcatatattctt |
274 |
Q |
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| T |
45181702 |
taccgtgcacctgaactatgtggttcttttttcacaaaagtaagttttttgtttgacatcatattttctt |
45181633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 191 - 248
Target Start/End: Complemental strand, 29962023 - 29961966
Alignment:
| Q |
191 |
ttgcaactaggtggtaccgtgcacctgaactatgtggttcttttttcacaaaagtaag |
248 |
Q |
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| T |
29962023 |
ttgcgactcggtggtatcgtgcacctgaactatgtggttcttttttctcaaaagtaag |
29961966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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