View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0920_low_29 (Length: 232)
Name: NF0920_low_29
Description: NF0920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0920_low_29 |
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| [»] chr7 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 25015315 - 25015084
Alignment:
| Q |
1 |
ctgattgttacttcaaatattgcagacaaattgacttcttcactggtcctacaggtatataaaattgttcattattcattaattaatgtaaattttgatc |
100 |
Q |
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| T |
25015315 |
ctgattgttacttcaaatattgcagacaaattgccttcttcactggtcctacaggtatataaaattgttcattattccttaattaatgtaaattttgatc |
25015216 |
T |
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| Q |
101 |
taaattgaatataattgattatgtggaactaaaatttacgtattctctattattacagttggaggacttcttaatgcaacatgtgggaatattaccgagc |
200 |
Q |
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| T |
25015215 |
taaattgaatataattgattatgtggaactaaaatttatgtattctctattattacagttggaggacttcttaatgcaacatgtgggaatattactgagc |
25015116 |
T |
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| Q |
201 |
tgatcatagcaatatttgctcttagcagcaac |
232 |
Q |
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| T |
25015115 |
tgatcatagcaatatttgctcttagcagcaac |
25015084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 56 - 232
Target Start/End: Complemental strand, 12662971 - 12662793
Alignment:
| Q |
56 |
tatataaaattgttcattattcattaattaatgta-aattttgatctaaattgaatataattgattatgtggaactaaaa-tttacgtattctctattat |
153 |
Q |
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||||||||||||||||| | ||||| |||||||| |||||||| |||| | |||||||||||||||||| | ||||| |||| | |||||||||||| |
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| T |
12662971 |
tatataaaattgttcataactcattgattaatgtttaattttgaactaagctaaatataattgattatgtgaagctaaatgtttatgcattctctattat |
12662872 |
T |
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| Q |
154 |
tacagttggaggacttcttaatgcaacatgtgggaatattaccgagctgatcatagcaatatttgctcttagcagcaac |
232 |
Q |
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| T |
12662871 |
tacagttggagggcttcttaatgcaacatttgggaatattactgagttgatagtagcaatatttgctcttagcagcaac |
12662793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 227
Target Start/End: Original strand, 5129633 - 5129699
Alignment:
| Q |
161 |
ggaggacttcttaatgcaacatgtgggaatattaccgagctgatcatagcaatatttgctcttagca |
227 |
Q |
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||||||||| | |||||||||||||||||| ||| || || ||||| ||||||||||| ||||||| |
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| T |
5129633 |
ggaggacttttgaatgcaacatgtgggaatgctacagaactcatcattgcaatatttgcacttagca |
5129699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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