View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0920_low_5 (Length: 538)
Name: NF0920_low_5
Description: NF0920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0920_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 37 - 530
Target Start/End: Original strand, 10794462 - 10794955
Alignment:
| Q |
37 |
tatataaagattttgttgatgaataatctgttaatgcatctttcaacgttcttaagaagtattttcgattttgttttttaatatatgatcatagaagcta |
136 |
Q |
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| T |
10794462 |
tatataaagattttgttgatgaataatatgttaatgcatctttcaacgttcttaagaagtattttcgattttgttttttaacatatgatcagagaagcta |
10794561 |
T |
|
| Q |
137 |
cgcaaatagaatatggggtaattatgtgtcagaaaaaagaaagaatgtgggggttatttcttatttgagccaagattataacctaattgtgccaaaattc |
236 |
Q |
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| T |
10794562 |
cgcaaatagaatatggggtaattatgtgtcagaaaaaagaaagaatgtgggggttatttcttatttgagccaagattataacctaattgtgccaaaattc |
10794661 |
T |
|
| Q |
237 |
aaccaccaaatgaagccaaaatcaaattattgataatgaggtgtgaaggaatgtggatttatgcgcatagtggaccccacattttacaccagccacatgc |
336 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10794662 |
aaccaccaaatgaagccaaaatcaaattattgatattgaggtgtgaaggaatgtggatttatgcgcataatggaccccacattttacaccagccacatgc |
10794761 |
T |
|
| Q |
337 |
taatggagttcacatttccaaaaaagatagacctctccaataaaggacaattagaacaagtgtccctcactccaattttctcaaaaccataattaaatat |
436 |
Q |
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| T |
10794762 |
taatggagttcacatttccaaaaaagatagacctctccaataaaggacaattagaacaagtgtccctcactccaattttctcaaaaccataattaaatat |
10794861 |
T |
|
| Q |
437 |
acctaaacccaaaagtcccttttacatatacatactttacattttcatatgtacctaacaacttaagaaatcctttactttcctcatattcttc |
530 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10794862 |
acctaaacccaaaagtcccttttacatatacatactttacattttcatatgtacctaacaacttaagaaatcctttactttcctcattttcttc |
10794955 |
T |
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