View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0920_low_8 (Length: 416)
Name: NF0920_low_8
Description: NF0920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0920_low_8 |
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| [»] chr8 (7 HSPs) |
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| [»] scaffold0384 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 13 - 416
Target Start/End: Complemental strand, 8724137 - 8723724
Alignment:
| Q |
13 |
aatatgacactaagagaaaa-ggggttcaaaatcaaattttcaaacaatgaatccaaacatcttcaaatttcagaacaacctatcagataagaaatatat |
111 |
Q |
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||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
8724137 |
aatatgacactaaaagaaaaaggggttcaaaatcaaattttcaaagaatgaatccaatcatcttcaaatttcagaacagcctatcagataagaaatatat |
8724038 |
T |
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| Q |
112 |
caaatcctgaaaggaaaaa-caca---------atactcatttcatttctagtgattaaagaatattttnnnnnnntgttacatattaaaagcattaaaa |
201 |
Q |
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| T |
8724037 |
caaatcctgaaagaaaaaaacacatacaatactatactcatttcatttctagtgattaaagaatatttaaaaaaaatgtta-atattaaaagcattaaaa |
8723939 |
T |
|
| Q |
202 |
gttaaaaccttaatgtagcaaaacaaacctggggatcatcaaaggtgacatcatgatactcatgaatgacccaattggtcttaacaccaggaacaggatt |
301 |
Q |
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||||||||||||||||| ||||||||||||||| ||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
8723938 |
gttaaaaccttaatgtaacaaaacaaacctgggaatcctctaaggtgacatcatgatactcatgaatgatccaattggtcttaacaccaggaacatgatt |
8723839 |
T |
|
| Q |
302 |
ttcatggtaaacaagagtcttcttaatcccaataacttcattggtacccctaatcctaatgttacggtccattccagtagctttccaaaagccattctta |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
8723838 |
ctcatggtaaacaagagtcttcttaatcccaataacttcattggtacccctaatcctaatgttacggtccattccagtagctttccaaaaaccattatta |
8723739 |
T |
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| Q |
402 |
gttgtccttttaaac |
416 |
Q |
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| T |
8723738 |
gttgtccttttaaac |
8723724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 223 - 416
Target Start/End: Complemental strand, 8740558 - 8740365
Alignment:
| Q |
223 |
aacaaacctggggatcatcaaaggtgacatcatgatactcatgaatgacccaattggtcttaacaccaggaacaggattttcatggtaaacaagagtctt |
322 |
Q |
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| T |
8740558 |
aacaaacctggtgatcatcaaagatggcatcatgatattcatgaatgatccaattagtcttaacaccaggaacaggatcttcatgataaacaagagtctt |
8740459 |
T |
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| Q |
323 |
cttaatcccaataacttcattggtacccctaatcctaatgttacggtccattccagtagctttccaaaagccattcttagttgtccttttaaac |
416 |
Q |
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| T |
8740458 |
cttagtcccaataattttattggtacctctaatcttaatgctacgatcatttccagtagctttccaaaaaccattattcgttgtccttttaaac |
8740365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 203 - 416
Target Start/End: Original strand, 14372225 - 14372438
Alignment:
| Q |
203 |
ttaaaaccttaat-gtagcaaaacaaacctggggatcatcaaaggtgacatcatgatactcatgaatgacccaattggtcttaacaccaggaacaggatt |
301 |
Q |
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|||||||||| || ||| |||||||||||||| ||| ||||||||| ||||||||| |||||||| |||| || | ||||||||||||||| || |
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| T |
14372225 |
ttaaaacctttattgtaacaaaacaaacctggt-atcttcaaaggtggtatcatgatattcatgaatcacccggctgcttttaacaccaggaacacgacc |
14372323 |
T |
|
| Q |
302 |
ttcatggtaaacaagagtcttcttaatcccaataacttcattggtacccctaatcctaatgttacggtccattccagtagctttccaaaagccattctta |
401 |
Q |
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| || |||||||||||| |||||||||||||||| | |||| ||||||||| | |||| || |||||| ||||||||||||||||||| ||||| || |
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| T |
14372324 |
attatagtaaacaagagttttcttaatcccaataatattattgctacccctaaccttaatcttccggtcctttccagtagctttccaaaaaccatttttt |
14372423 |
T |
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| Q |
402 |
gttgtccttttaaac |
416 |
Q |
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| T |
14372424 |
gttgtccttttaaac |
14372438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 215 - 416
Target Start/End: Complemental strand, 8705490 - 8705289
Alignment:
| Q |
215 |
tgtagcaaaacaaacctggggatcatcaaaggtgacatcatgatactcatgaatgacccaattggtcttaacaccaggaacaggattttcatggtaaaca |
314 |
Q |
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|||| |||||||||||| | ||| ||||||||| ||||||||| |||||||| ||||| || | ||||||||||||||| || | | ||||||| |
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| T |
8705490 |
tgtaacaaaacaaaccttgtcatcttcaaaggtggtatcatgatattcatgaatcacccagctgcttttaacaccaggaacacgaccattgtagtaaaca |
8705391 |
T |
|
| Q |
315 |
agagtcttcttaatcccaataacttcattggtacccctaatcctaatgttacggtccattccagtagctttccaaaagccattcttagttgtccttttaa |
414 |
Q |
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|||||||||||||||||||||| | |||| ||||||||| | |||| || |||||| | ||||||||||||||||| ||| | || |||||||| |||| |
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| T |
8705390 |
agagtcttcttaatcccaataatattattgctacccctaaccttaatcttccggtccttaccagtagctttccaaaaaccagtatttgttgtcctcttaa |
8705291 |
T |
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| Q |
415 |
ac |
416 |
Q |
| |
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|| |
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| T |
8705290 |
ac |
8705289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 296
Target Start/End: Complemental strand, 8691229 - 8691129
Alignment:
| Q |
196 |
ttaaaagttaaaaccttaatgtagcaaaacaaacctggggatcatcaaaggtgacatcatgatactcatgaatgacccaattggtcttaacaccaggaac |
295 |
Q |
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||||||||| |||| || |||| |||||||||||||| ||||| ||||||| || |||||| |||||||| ||||| ||| | |||||||||||||| |
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| T |
8691229 |
ttaaaagtttaaacattgttgtaacaaaacaaacctggttatcatgaaaggtggcagaatgatattcatgaatcacccagttgcttttaacaccaggaac |
8691130 |
T |
|
| Q |
296 |
a |
296 |
Q |
| |
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| T |
8691129 |
a |
8691129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 123
Target Start/End: Complemental strand, 8722702 - 8722621
Alignment:
| Q |
40 |
aaaatcaaattttcaaacaatgaatccaaacatcttcaaatttcagaacaacctatcagataagaaatatatcaaatcctgaaa |
123 |
Q |
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||||||||| ||||||||||| ||||||| ||||||| |||||||||||||| || ||| ||||| |||||||||||||||| |
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| T |
8722702 |
aaaatcaaaatttcaaacaataaatccaataatcttcatatttcagaacaaccaattggat-agaaa-atatcaaatcctgaaa |
8722621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 342
Target Start/End: Complemental strand, 8722533 - 8722440
Alignment:
| Q |
249 |
acatcatgatactcatgaatgacccaattggtcttaacaccaggaacaggattttcatggtaaacaagagtcttcttaatcccaataacttcat |
342 |
Q |
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|||||||| |||||| |||| ||||||||||| |||||||||||| |||| | |||||||||||| ||||| ||||||||||||||| |
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| T |
8722533 |
acatcatggtactcacgaataacccaattggttttaacaccaggatgaggagcaaggtagtaaacaagagttttcttcgtcccaataacttcat |
8722440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0384 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0384
Description:
Target: scaffold0384; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 179 - 243
Target Start/End: Original strand, 7682 - 7746
Alignment:
| Q |
179 |
gttacatattaaaagcattaaaagttaaaaccttaatgtagcaaaacaaacctggggatcatcaa |
243 |
Q |
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|||| ||||||||| ||||||| | |||||||||||||| |||||||||||| ||||||||||| |
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| T |
7682 |
gttatatattaaaataattaaaaatcaaaaccttaatgtaacaaaacaaacctagggatcatcaa |
7746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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