View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0921_high_13 (Length: 311)

Name: NF0921_high_13
Description: NF0921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0921_high_13
NF0921_high_13
[»] chr1 (2 HSPs)
chr1 (12-158)||(8051807-8051952)
chr1 (12-158)||(16273973-16274118)
[»] chr2 (3 HSPs)
chr2 (12-158)||(33075916-33076062)
chr2 (12-158)||(27849040-27849185)
chr2 (12-70)||(44702520-44702578)
[»] chr3 (1 HSPs)
chr3 (12-158)||(37087821-37087967)
[»] chr8 (1 HSPs)
chr8 (12-158)||(45020832-45020977)
[»] scaffold0446 (1 HSPs)
scaffold0446 (12-158)||(11819-11964)
[»] chr4 (1 HSPs)
chr4 (12-158)||(56112953-56113098)
[»] chr7 (1 HSPs)
chr7 (12-158)||(42337799-42337944)
[»] chr6 (1 HSPs)
chr6 (80-158)||(15977343-15977421)
[»] chr5 (1 HSPs)
chr5 (12-68)||(4533804-4533860)


Alignment Details
Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 12 - 158
Target Start/End: Complemental strand, 8051952 - 8051807
Alignment:
Q  12 atgaacataacaccattgttgtttcttttgtccttaatgttggaaagaaggcattttgcnnnnnnnnnttctcccaattctttcatcctcatccttcttt 111  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||         |||||||||||||||| ||||| |||||||||    
T  8051952 atgaacataacaccattgttgtttcttttgtccataatgttggaaaaaaggcattttgcaaaaaaaa-ttctcccaattctttcttcctcttccttcttt 8051854  T
Q  112 cctaaccaagacttgcaaattattaaaatcaccaacactgagtagca 158  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||    
T  8051853 cctaaccaagacttgcaaattattaaaatcatcaacactgagaagca 8051807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 12 - 158
Target Start/End: Original strand, 16273973 - 16274118
Alignment:
Q  12 atgaacataacaccattgttgtttcttttgtccttaatgttggaaagaaggcattttgcnnnnnnnnnttctcccaattctttcatcctcatccttcttt 111  Q
    ||||||||||||||||||||||||||||||||| ||||| | ||||||| |||||||||         |||||||||||||||| ||||| |||||||||    
T  16273973 atgaacataacaccattgttgtttcttttgtccataatgctagaaagaatgcattttgcaaaaaaaa-ttctcccaattctttcttcctcttccttcttt 16274071  T
Q  112 cctaaccaagacttgcaaattattaaaatcaccaacactgagtagca 158  Q
    ||||||||||||||||||||||||||||| | |||||||||| ||||    
T  16274072 cctaaccaagacttgcaaattattaaaattatcaacactgagaagca 16274118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 6e-40; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 12 - 158
Target Start/End: Complemental strand, 33076062 - 33075916
Alignment:
Q  12 atgaacataacaccattgttgtttcttttgtccttaatgttggaaagaaggcattttgcnnnnnnnnnttctcccaattctttcatcctcatccttcttt 111  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||         |||||||||||||||| ||||| |||||||||    
T  33076062 atgaacataacaccattgttgtttcttttgtccataatgctggaaagaatgcattttgcaaaaaaaaattctcccaattctttcttcctcttccttcttt 33075963  T
Q  112 cctaaccaagacttgcaaattattaaaatcaccaacactgagtagca 158  Q
     |||||||||||||||||||||||||||| | |||||||||| ||||    
T  33075962 gctaaccaagacttgcaaattattaaaattatcaacactgagaagca 33075916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 12 - 158
Target Start/End: Complemental strand, 27849185 - 27849040
Alignment:
Q  12 atgaacataacaccattgttgtttcttttgtccttaatgttggaaagaaggcattttgcnnnnnnnnnttctcccaattctttcatcctcatccttcttt 111  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||          |||||||||||||||| ||||| |||||||||    
T  27849185 atgaacataacaccattgttgtttcttttgtccataatgctggaaagaatgcattttg-taaaaaaaattctcccaattctttcttcctcttccttcttt 27849087  T
Q  112 cctaaccaagacttgcaaattattaaaatcaccaacactgagtagca 158  Q
    ||||||||||||||||||||||||||||| | |||||||||| ||||    
T  27849086 cctaaccaagacttgcaaattattaaaattatcaacactgagaagca 27849040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 44702520 - 44702578
Alignment:
Q  12 atgaacataacaccattgttgtttcttttgtccttaatgttggaaagaaggcattttgc 70  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||    
T  44702520 atgaacataacaccattgttgtttcttttgtccataatgctggaaagaatgcattttgc 44702578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 12 - 158
Target Start/End: Complemental strand, 37087967 - 37087821
Alignment:
Q  12 atgaacataacaccattgttgtttcttttgtccttaatgttggaaagaaggcattttgcnnnnnnnnnttctcccaattctttcatcctcatccttcttt 111  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||          ||| ||||||||||| ||||| |||||||||    
T  37087967 atgaacataacaccattgttgtttcttttgtccataatgctggaaagaatgcattttgcaaaaaaaaaatcttccaattctttcttcctcttccttcttt 37087868  T
Q  112 cctaaccaagacttgcaaattattaaaatcaccaacactgagtagca 158  Q
    ||||||||||||||||||||||||||||| | |||||||||| ||||    
T  37087867 cctaaccaagacttgcaaattattaaaattatcaacactgagaagca 37087821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 12 - 158
Target Start/End: Original strand, 45020832 - 45020977
Alignment:
Q  12 atgaacataacaccattgttgtttcttttgtccttaatgttggaaagaaggcattttgcnnnnnnnnnttctcccaattctttcatcctcatccttcttt 111  Q
    |||||||||||| |||||||||||||||||||| ||||| ||||||||| |||||||||         | |||||||||||||| ||||| |||||||||    
T  45020832 atgaacataacatcattgttgtttcttttgtccataatgctggaaagaatgcattttgcaaaaaaaaat-ctcccaattctttcttcctcttccttcttt 45020930  T
Q  112 cctaaccaagacttgcaaattattaaaatcaccaacactgagtagca 158  Q
    ||||||||||||||||||||||||||||| | |||||||||| ||||    
T  45020931 cctaaccaagacttgcaaattattaaaattatcaacactgagaagca 45020977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0446 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 12 - 158
Target Start/End: Original strand, 11819 - 11964
Alignment:
Q  12 atgaacataacaccattgttgtttcttttgtccttaatgttggaaagaaggcattttgcnnnnnnnnnttctcccaattctttcatcctcatccttcttt 111  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||| | |||||||         | |||||||||||||| ||||| |||||||||    
T  11819 atgaacataacaccattgttgtttcttttgtccataatgctggaaagaatgtattttgcaaaaaaaaat-ctcccaattctttcttcctcttccttcttt 11917  T
Q  112 cctaaccaagacttgcaaattattaaaatcaccaacactgagtagca 158  Q
    ||||||||||||||||||||||||||||| | ||||| |||| ||||    
T  11918 cctaaccaagacttgcaaattattaaaattatcaacattgagaagca 11964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 12 - 158
Target Start/End: Original strand, 56112953 - 56113098
Alignment:
Q  12 atgaacataacaccattgttgtttcttttgtccttaatgttggaaagaaggcattttgcnnnnnnnnnttctcccaattctttcatcctcatccttcttt 111  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||| | |||||||         | |||||||||||||| ||||| |||||||||    
T  56112953 atgaacataacaccattgttgtttcttttgtccataatgctggaaagaatgtattttgcaaaaaaaaat-ctcccaattctttcttcctcttccttcttt 56113051  T
Q  112 cctaaccaagacttgcaaattattaaaatcaccaacactgagtagca 158  Q
    ||||||||||||||||||||||||||||| | ||||| |||| ||||    
T  56113052 cctaaccaagacttgcaaattattaaaattatcaacattgagaagca 56113098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 12 - 158
Target Start/End: Complemental strand, 42337944 - 42337799
Alignment:
Q  12 atgaacataacaccattgttgtttcttttgtccttaatgttggaaagaaggcattttgcnnnnnnnnnttctcccaattctttcatcctcatccttcttt 111  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||         |||||||| ||||||| ||||| |||||||||    
T  42337944 atgaacataacaccattgttgtttcttttgtccataatgctggaaagaatgcattttgcaaaacaaa-ttctcccacttctttcttcctcttccttcttt 42337846  T
Q  112 cctaaccaagacttgcaaattattaaaatcaccaacactgagtagca 158  Q
    ||||||||| ||||||||||||||||||| | ||||| |||| ||||    
T  42337845 cctaaccaaaacttgcaaattattaaaattatcaacattgaggagca 42337799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 80 - 158
Target Start/End: Complemental strand, 15977421 - 15977343
Alignment:
Q  80 ttctcccaattctttcatcctcatccttctttcctaaccaagacttgcaaattattaaaatcaccaacactgagtagca 158  Q
    |||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||| | ||||| |||| ||||    
T  15977421 ttctcccacttctttcttcctcttccttctttcctaaccaagacttgcaaattattaaaattatcaacattgaggagca 15977343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 4533860 - 4533804
Alignment:
Q  12 atgaacataacaccattgttgtttcttttgtccttaatgttggaaagaaggcatttt 68  Q
    ||||||||||||||||||||||||| ||||||| ||||| ||||||||| |||||||    
T  4533860 atgaacataacaccattgttgtttcctttgtccataatgctggaaagaatgcatttt 4533804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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