View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0921_high_14 (Length: 281)
Name: NF0921_high_14
Description: NF0921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0921_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 58 - 238
Target Start/End: Complemental strand, 34814718 - 34814538
Alignment:
| Q |
58 |
cacttttctaattgaaattatgttaaagataatgtggtagatatatatacaccttgtcacgacagccatcgtccaattacttctagcagacagagaaatg |
157 |
Q |
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| T |
34814718 |
cacttttctaattgaaattatgttaaagataatgtggtagatatatatacaccttgtcaccacagccatcgtccaattacttctagcagacagagaaatg |
34814619 |
T |
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| Q |
158 |
aatccaaaattgcaagtacacttgaaaggattgctaaactaatgcaaactccgaaactgaaacttggtacaattacgacct |
238 |
Q |
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| T |
34814618 |
aatccaaaattgcaagtacacttgaaaggattgctgaactactgcaaactccgaaactgaaacttggtacaattacaacct |
34814538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 89 - 231
Target Start/End: Complemental strand, 34815670 - 34815528
Alignment:
| Q |
89 |
atgtggtagatatatatacaccttgtcacgacagccatcgtccaatt-acttctagcagacagagaaatgaatccaaaattgcaagtacacttgaaagga |
187 |
Q |
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||||| || ||||||||| ||||||||| | ||||| | ||||||| ||||| || | |||||| |||||||||||| || ||||| ||||||||| |
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| T |
34815670 |
atgtgatatatatatatataccttgtcaacatagccaccttccaatttacttcaggcggccagagagatgaatccaaaactgttggtacatttgaaagga |
34815571 |
T |
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| Q |
188 |
ttgctaaactaatgcaaactccgaaactgaaacttggtacaatt |
231 |
Q |
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| T |
34815570 |
ttgctaaattaat-caaactcctaaagtgaaacttggtacaatt |
34815528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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