View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0921_high_7 (Length: 410)
Name: NF0921_high_7
Description: NF0921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0921_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 32 - 325
Target Start/End: Complemental strand, 25666944 - 25666650
Alignment:
| Q |
32 |
ttcatacccttgaggatgcccgacgagcagctcgaaatcggtgacgatgcggctcacggcgaggaggcttatgccctttggggtgatggagaaaaatatg |
131 |
Q |
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| T |
25666944 |
ttcatacccttgaggatgcccgacgagcagctcgaaatcggtgacgatgcggctcacggagaggaggcttatgccctttggggtgatggagaaaaatatg |
25666845 |
T |
|
| Q |
132 |
atccaactagacatggttcgttgaatactggtaacactggagtgtcaccttatgtcaatggtgcaagaggtgtgactataaatttatgagtcac-actca |
230 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25666844 |
atccaactaggcatggttcgttgaatactggtaacactggagtgtcaccttatgttaatggtgcaagaggtgtgactataaatttatgagtcacaacttg |
25666745 |
T |
|
| Q |
231 |
caagtataggtattttgtgtatggaaggtgtgaggagaattttgatttttcccatggaagaaaagttctcaagttttgagatcaatttggttgtg |
325 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25666744 |
caagtataggtgttttgtgtatggaaggtgtgaggagaattttgatttttcccatggaagaaaagttctcaagttttgagatcaaattggttgtg |
25666650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 140
Target Start/End: Complemental strand, 5622152 - 5622044
Alignment:
| Q |
32 |
ttcatacccttgaggatgcccgacgagcagctcgaaatcggtgacgatgcggctcacggcgaggaggcttatgccctttggggtgatggagaaaaatatg |
131 |
Q |
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|||||||| ||||||||| | |||| |||||||| | ||||| ||||| | ||||||||||| |||||||| |||||||||||||||||||| |||| |
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| T |
5622152 |
ttcataccgttgaggatgtcgaacgaccagctcgagactggtgatgatgctgtccacggcgaggaagcttatgcactttggggtgatggagaaaagtatg |
5622053 |
T |
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| Q |
132 |
atccaacta |
140 |
Q |
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| T |
5622052 |
acccaacta |
5622044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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