View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0921_low_13 (Length: 380)
Name: NF0921_low_13
Description: NF0921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0921_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 76 - 287
Target Start/End: Complemental strand, 16633185 - 16632979
Alignment:
| Q |
76 |
gatgaatgttgtaccaagnnnnnnnggtgatgaatgaatgactgctagctagctaattgtttaatataggcgaccaccatgtcaacgattacaaacgtca |
175 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16633185 |
gatgaatgttgtaccaagaaaaaaaggtgatgaatgaatgactgctagctagctaattgtttaatataggcgaccaccatgtcaacgattacaaacgtca |
16633086 |
T |
|
| Q |
176 |
gcagcatcatgtctgccatagacatcatccttaatcttcatgtttatcacgttctgtttttataagtgaaacaagagataatatatacatagtagggtct |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
16633085 |
gcagcatcatgtctgccatagacatcatccttaatcttcatgtttatcac-----gtttttataagtgaaacaagagataatatatacatagtagtgtct |
16632991 |
T |
|
| Q |
276 |
tggtagtttcct |
287 |
Q |
| |
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|||||||||||| |
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|
| T |
16632990 |
tggtagtttcct |
16632979 |
T |
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