View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0921_low_14 (Length: 357)
Name: NF0921_low_14
Description: NF0921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0921_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 30 - 181
Target Start/End: Complemental strand, 28111066 - 28110915
Alignment:
| Q |
30 |
atgaatggacgtggaatccacaagcgtgtttggtgcggtaatggtggatttttgggccttttagatgggcgttgaggctttggtatgctgctgctctgct |
129 |
Q |
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| T |
28111066 |
atgaatggacgtggaatccacaagcgtgtttggtgcggtaatggtggatttttgggccttttaggtgggcgttgaggctttggtatgctgctgctctgct |
28110967 |
T |
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| Q |
130 |
gttttggctaggagtatatgacagcctcattgctgtcctgcttctttgcacc |
181 |
Q |
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| T |
28110966 |
gttttggctaggagtatatgacagcctcattgctgtcctgcttctttgcacc |
28110915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 182 - 351
Target Start/End: Complemental strand, 40383213 - 40383045
Alignment:
| Q |
182 |
agacggagagagtatttgatacatttatatattcnnnnnnntaaattaataatagttatacacaaaaggtacataaaacgatacttcttatgctaaataa |
281 |
Q |
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| T |
40383213 |
agacggagagagtatttgatacatttatatattcaaaaaaataaattaataatagttatacacaaaaggtacataaaacgatacttcttatgctaaataa |
40383114 |
T |
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| Q |
282 |
caaagatgcttcctatattagtgataacttgaattattaaaccataaacagacgatactccctatgctac |
351 |
Q |
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| T |
40383113 |
-aaagatgcttcctatgttagtgataacttgaattattaaactataaacagatgatactccctatgctac |
40383045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 30 - 181
Target Start/End: Original strand, 24837183 - 24837334
Alignment:
| Q |
30 |
atgaatggacgtggaatccacaagcgtgtttggtgcggtaatggtggatttttgggccttttagatgggcgttgaggctttggtatgctgctgctctgct |
129 |
Q |
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| T |
24837183 |
atgaatggacgtggaatccacaagcgtgtttggtgcggtaatggtggatttttgggccttttaggtgggcgttgaggctttggtatgctgctgctctgct |
24837282 |
T |
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| Q |
130 |
gttttggctaggagtatatgacagcctcattgctgtcctgcttctttgcacc |
181 |
Q |
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| T |
24837283 |
gttttggctaggagtatatgacagcctcattgctgtcctgcttctttgcacc |
24837334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 30871450 - 30871518
Alignment:
| Q |
95 |
tgggcgttgaggctttggtatgctgctgctctgctgttttggctaggagtatatgacagcctcattgct |
163 |
Q |
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| T |
30871450 |
tgggcggtgaggctgttgtatgctgctgttttgctgttttgacagggaatatatgacagcctcgttgct |
30871518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 32 - 181
Target Start/End: Original strand, 4028485 - 4028634
Alignment:
| Q |
32 |
gaatggacgtggaatccacaagcgtgtttggtgcggtaatggtggatttttgggccttttagatgggcgttgaggctttggtatgctgctgctctgctgt |
131 |
Q |
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|||||||| |||||||| |||| |||| ||||||||||||||||| |||| ||| || ||| ||| | || |||||||||||||||||| |||||| | |
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| T |
4028485 |
gaatggacttggaatccgcaagagtgtctggtgcggtaatggtggtttttggggtctgttatgcgggtgctgcggctttggtatgctgctgttctgcttt |
4028584 |
T |
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| Q |
132 |
tttggctaggagtatatgacagcctcattgctgtcctgcttctttgcacc |
181 |
Q |
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|||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
4028585 |
tttggctaggagtatatgacggcctcactgctgtcctgcttctttgcacc |
4028634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 33 - 181
Target Start/End: Original strand, 34326410 - 34326558
Alignment:
| Q |
33 |
aatggacgtggaatccacaagcgtgtttggtgcggtaatggtggatttttgggccttttagatgggcgttgaggctttggtatgctgctgctctgctgtt |
132 |
Q |
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||||||| ||||||||||||| |||| ||||||||||||||||| |||| ||| || ||| |||| | || |||||||||||||||||| |||| | || |
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| T |
34326410 |
aatggacttggaatccacaagagtgtctggtgcggtaatggtggtttttggggtctgttacgtgggtgctgcggctttggtatgctgctgttctgatttt |
34326509 |
T |
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| Q |
133 |
ttggctaggagtatatgacagcctcattgctgtcctgcttctttgcacc |
181 |
Q |
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| T |
34326510 |
tcggctaggagtatatgacagcctcgctgctgtcctgcttctttgcacc |
34326558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 171
Target Start/End: Complemental strand, 35052375 - 35052330
Alignment:
| Q |
126 |
tgctgttttggctaggagtatatgacagcctcattgctgtcctgct |
171 |
Q |
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| T |
35052375 |
tgctgttttggctacgagtatatgacagcctcattgttgtcctgct |
35052330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 322
Target Start/End: Complemental strand, 22793064 - 22793016
Alignment:
| Q |
272 |
tgctaaataacaaagatgcttcctatattagtgataacttgaattattaaa |
322 |
Q |
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| T |
22793064 |
tgctaaataacaaagatgcttcctatgtt--tgaaaacttgaattattaaa |
22793016 |
T |
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