View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0921_low_15 (Length: 355)

Name: NF0921_low_15
Description: NF0921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0921_low_15
NF0921_low_15
[»] chr4 (2 HSPs)
chr4 (23-174)||(28110915-28111066)
chr4 (175-344)||(40383045-40383213)
[»] chr3 (2 HSPs)
chr3 (23-174)||(24837183-24837334)
chr3 (88-156)||(30871450-30871518)
[»] chr8 (1 HSPs)
chr8 (25-174)||(4028485-4028634)
[»] chr2 (1 HSPs)
chr2 (26-174)||(34326410-34326558)
[»] chr7 (1 HSPs)
chr7 (119-164)||(35052330-35052375)
[»] chr1 (1 HSPs)
chr1 (265-315)||(22793016-22793064)


Alignment Details
Target: chr4 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 23 - 174
Target Start/End: Complemental strand, 28111066 - 28110915
Alignment:
Q  23 atgaatggacgtggaatccacaagcgtgtttggtgcggtaatggtggatttttgggccttttagatgggcgttgaggctttggtatgctgctgctctgct 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  28111066 atgaatggacgtggaatccacaagcgtgtttggtgcggtaatggtggatttttgggccttttaggtgggcgttgaggctttggtatgctgctgctctgct 28110967  T
Q  123 gttttggctaggagtatatgacagcctcattgctgtcctgcttctttgcacc 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28110966 gttttggctaggagtatatgacagcctcattgctgtcctgcttctttgcacc 28110915  T

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Target: chr4; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 175 - 344
Target Start/End: Complemental strand, 40383213 - 40383045
Alignment:
Q  175 agacggagagagtatttgatacatttatatattcnnnnnnntaaattaataatagttatacacaaaaggtacataaaacgatacttcttatgctaaataa 274  Q
    ||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40383213 agacggagagagtatttgatacatttatatattcaaaaaaataaattaataatagttatacacaaaaggtacataaaacgatacttcttatgctaaataa 40383114  T
Q  275 caaagatgcttcctatattagtgataacttgaattattaaaccataaacagacgatactccctatgctac 344  Q
     ||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  40383113 -aaagatgcttcctatgttagtgataacttgaattattaaactataaacagatgatactccctatgctac 40383045  T

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Target: chr3 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 23 - 174
Target Start/End: Original strand, 24837183 - 24837334
Alignment:
Q  23 atgaatggacgtggaatccacaagcgtgtttggtgcggtaatggtggatttttgggccttttagatgggcgttgaggctttggtatgctgctgctctgct 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  24837183 atgaatggacgtggaatccacaagcgtgtttggtgcggtaatggtggatttttgggccttttaggtgggcgttgaggctttggtatgctgctgctctgct 24837282  T
Q  123 gttttggctaggagtatatgacagcctcattgctgtcctgcttctttgcacc 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24837283 gttttggctaggagtatatgacagcctcattgctgtcctgcttctttgcacc 24837334  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 156
Target Start/End: Original strand, 30871450 - 30871518
Alignment:
Q  88 tgggcgttgaggctttggtatgctgctgctctgctgttttggctaggagtatatgacagcctcattgct 156  Q
    |||||| ||||||| | ||||||||||| | |||||||||| |  ||| |||||||||||||| |||||    
T  30871450 tgggcggtgaggctgttgtatgctgctgttttgctgttttgacagggaatatatgacagcctcgttgct 30871518  T

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Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 25 - 174
Target Start/End: Original strand, 4028485 - 4028634
Alignment:
Q  25 gaatggacgtggaatccacaagcgtgtttggtgcggtaatggtggatttttgggccttttagatgggcgttgaggctttggtatgctgctgctctgctgt 124  Q
    |||||||| |||||||| |||| |||| ||||||||||||||||| |||| ||| || |||   ||| | || |||||||||||||||||| |||||| |    
T  4028485 gaatggacttggaatccgcaagagtgtctggtgcggtaatggtggtttttggggtctgttatgcgggtgctgcggctttggtatgctgctgttctgcttt 4028584  T
Q  125 tttggctaggagtatatgacagcctcattgctgtcctgcttctttgcacc 174  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  4028585 tttggctaggagtatatgacggcctcactgctgtcctgcttctttgcacc 4028634  T

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Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 26 - 174
Target Start/End: Original strand, 34326410 - 34326558
Alignment:
Q  26 aatggacgtggaatccacaagcgtgtttggtgcggtaatggtggatttttgggccttttagatgggcgttgaggctttggtatgctgctgctctgctgtt 125  Q
    ||||||| ||||||||||||| |||| ||||||||||||||||| |||| ||| || |||  |||| | || |||||||||||||||||| |||| | ||    
T  34326410 aatggacttggaatccacaagagtgtctggtgcggtaatggtggtttttggggtctgttacgtgggtgctgcggctttggtatgctgctgttctgatttt 34326509  T
Q  126 ttggctaggagtatatgacagcctcattgctgtcctgcttctttgcacc 174  Q
    | |||||||||||||||||||||||  ||||||||||||||||||||||    
T  34326510 tcggctaggagtatatgacagcctcgctgctgtcctgcttctttgcacc 34326558  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 164
Target Start/End: Complemental strand, 35052375 - 35052330
Alignment:
Q  119 tgctgttttggctaggagtatatgacagcctcattgctgtcctgct 164  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||    
T  35052375 tgctgttttggctacgagtatatgacagcctcattgttgtcctgct 35052330  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 315
Target Start/End: Complemental strand, 22793064 - 22793016
Alignment:
Q  265 tgctaaataacaaagatgcttcctatattagtgataacttgaattattaaa 315  Q
    |||||||||||||||||||||||||| ||  ||| ||||||||||||||||    
T  22793064 tgctaaataacaaagatgcttcctatgtt--tgaaaacttgaattattaaa 22793016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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