View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0921_low_17 (Length: 317)
Name: NF0921_low_17
Description: NF0921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0921_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 96 - 253
Target Start/End: Original strand, 11845149 - 11845319
Alignment:
| Q |
96 |
agaaaaatattaaatcgtgacttttcaacgcaaatgcagaacaagaacacagccataaagggtcatcaggtagta---------gt--tactagtagtaa |
184 |
Q |
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| T |
11845149 |
agaaaaatattaaaccgtggctcttcaacgtaaatgcagaacaaggacaaagccataaagggtcaataggtagtaagtagtacagtagtactagtagtaa |
11845248 |
T |
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| Q |
185 |
atatcttcagattaaaatcgcttgaagta--tcttcaattcacaggctttaattgatgagaaaccagccat |
253 |
Q |
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| T |
11845249 |
atatcttcagagtacaatcgcttgaagtaactcttcagttcacaggctttaattgatgagaaaccaaccat |
11845319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 96 - 238
Target Start/End: Complemental strand, 12517408 - 12517257
Alignment:
| Q |
96 |
agaaaaatattaaatcgtgacttttcaacgcaaatgcagaacaagaacacagccataaagggtcatcaggtag-----tagt--tactagtagtaaatat |
188 |
Q |
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| T |
12517408 |
agaaaaatattaaaccgtggcttttcaacgcaaatgctgaacaagaacatagccctaaagggtcaacaggtaggactctagtagtactagtagtaaatat |
12517309 |
T |
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| Q |
189 |
cttcagattaaaatcgcttgaagta--tcttcaattcacaggctttaattga |
238 |
Q |
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| T |
12517308 |
tttcagagtaaaagtgcttgaaataactcttcaattcacaggctttaattga |
12517257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 117 - 213
Target Start/End: Original strand, 11855534 - 11855634
Alignment:
| Q |
117 |
ttttcaacgcaaatgcagaacaagaacacagccataaagggtca----tcaggtagtagttactagtagtaaatatcttcagattaaaatcgcttgaagt |
212 |
Q |
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| T |
11855534 |
ttttcaacgcaaatgcagaacaagaacacagccataaagagtcaacgtacaggaagtagttactagtagtaaatatcttcagcgtaaaatcgcttcaagt |
11855633 |
T |
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| Q |
213 |
a |
213 |
Q |
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| T |
11855634 |
a |
11855634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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