View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0921_low_2 (Length: 753)
Name: NF0921_low_2
Description: NF0921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0921_low_2 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 483; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 190 - 722
Target Start/End: Original strand, 26839468 - 26839997
Alignment:
| Q |
190 |
atgaaagaaatggtggaggaaatcaacatccctacagaaactaagtcgttacagaacatttgaattgaatagttgctattcctgataaaactaattaaat |
289 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26839468 |
atgaaagaaatggtggaggaaatcaaaatccctacagaaactaagtcgttacagaacatttgaattgaatagttgctattcctgataaaactaattaaat |
26839567 |
T |
|
| Q |
290 |
ttgcatatgcataagcaacctctatagtacagaaataaaagatataatctaatttatggactaagacacaatgttattcaacaaaagagaaaaacctttt |
389 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26839568 |
ttgcatatgcatcagcaacctctatagtacagaaataaaagatataatctaatttatggactaagacacaatgctattcaacaaaagagaaaaacctttt |
26839667 |
T |
|
| Q |
390 |
aaattaagcaaagtagtactattgctattctaataagagaaaatagcaaattagatagaaatgcaattcaaaaactggacgaagatcaaaactggagtct |
489 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
26839668 |
aaattaagcaaagtagta---ttgctattctaataagagaaaatagcaaattagatagaaatgcaattcaaaaacaggacgaagatcaaaactggagtct |
26839764 |
T |
|
| Q |
490 |
gaaacttatgcagaactatagaattgtaagacactacctctaaaatcaagtttgtcaatgtaaaaatgctatctaaatcccttcgcatacctgtcaagac |
589 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26839765 |
gaaacttatgcagaactatagaattgtaagacactacctctaaaatcaagtttgtcaatgtaaaaatgctatctaaatcccttcgcatacctgtcaagac |
26839864 |
T |
|
| Q |
590 |
aattaaagacaaagtcagcttaccttaacaatcgcacaaatgcaacatgagtcacacttcaaatcctattatttcatttcaaactaaatttttagagcat |
689 |
Q |
| |
|
||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
26839865 |
aattaaaaacaaagttagctcaccttaacaatcgcacaaatgcaacatgagtcacacttcaaatgctattatttcatttcaaactaaatttttagagcat |
26839964 |
T |
|
| Q |
690 |
actatatgcagcacacaaacaaaaattatttat |
722 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| |
|
|
| T |
26839965 |
aatatatgcagcacacaaacaaaaattatttat |
26839997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 422 - 527
Target Start/End: Original strand, 34507428 - 34507533
Alignment:
| Q |
422 |
ataagagaaaatagcaaattagatagaaatgcaattcaaaaactggacgaagatcaaaactggagtctgaaacttatgcagaactatagaattgtaagac |
521 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| | |||||||||| || ||||||||||||||||||||| |
|
|
| T |
34507428 |
ataagagaaaatagcaaattagatagaaatccaattcaaaaacaggacgaagatcaaaactgaattctgaaacttgtgtagaactatagaattgtaagac |
34507527 |
T |
|
| Q |
522 |
actacc |
527 |
Q |
| |
|
|||||| |
|
|
| T |
34507528 |
actacc |
34507533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 422 - 527
Target Start/End: Complemental strand, 29354621 - 29354516
Alignment:
| Q |
422 |
ataagagaaaatagcaaattagatagaaatgcaattcaaaaactggacgaagatcaaaactggagtctgaaacttatgcagaactatagaattgtaagac |
521 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||| | |||||||||| || |||| |||||||||| |||| |
|
|
| T |
29354621 |
ataagagaaaatagcaaattagaaagaaatccaattcaaaaacaggacgaagatcaaaactgaattctgaaacttgtgtagaaatatagaattgcaagat |
29354522 |
T |
|
| Q |
522 |
actacc |
527 |
Q |
| |
|
|||||| |
|
|
| T |
29354521 |
actacc |
29354516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 611 - 714
Target Start/End: Original strand, 34507633 - 34507736
Alignment:
| Q |
611 |
accttaacaatcgcacaaatgcaacatgagtcacacttcaaatcctattatttcatttcaaactaaatttttagagcatactatatgcagcacacaaaca |
710 |
Q |
| |
|
|||| |||||||||| ||||||||||| ||||||| ||||||||| |||||||||||||||| ||| || ||||||||| ||||||||||||||||||| |
|
|
| T |
34507633 |
acctcaacaatcgcaaaaatgcaacataagtcacatttcaaatcccattatttcatttcaaatcaaaattctagagcataatatatgcagcacacaaaca |
34507732 |
T |
|
| Q |
711 |
aaaa |
714 |
Q |
| |
|
|||| |
|
|
| T |
34507733 |
aaaa |
34507736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 26839262 - 26839307
Alignment:
| Q |
11 |
cagagatgcaaatggtctttgttggagctgtttttgttgaagcagt |
56 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26839262 |
cagagatgcaaatggtctttgttggagctgtttttgttgaagcagt |
26839307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 85
Target Start/End: Original strand, 26839338 - 26839368
Alignment:
| Q |
55 |
gtgtcaagttgtttggttattccaccatccc |
85 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
26839338 |
gtgtcaagttgtttggttattccaccatccc |
26839368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 190 - 715
Target Start/End: Original strand, 50974567 - 50975087
Alignment:
| Q |
190 |
atgaaagaaatggtggaggaaatcaacatccctacagaaactaagtcgttacagaacatttgaattgaatagttgctattcctgataaaactaattaaat |
289 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||| ||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
50974567 |
atgaaagaaatggtggaggaaattaacatctctacgtaaactaaatcgttacagaacatttgaattgcatagttgctattcccgataaaactaattaaat |
50974666 |
T |
|
| Q |
290 |
ttgcatatgcataagca--acctctatagtacagaaataaaagatataatctaatttatggactaagacacaatgttattcaacaaaagagaaaaacctt |
387 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
50974667 |
ttgcatatgcataagcaccacctctatagtacataaataaaagatataatctaatttatggactaagatacaatgctattcaacaaaagagaaaaacctt |
50974766 |
T |
|
| Q |
388 |
ttaaattaagcaaagtagtactattgctattctaataagagaaaatagcaaattagatagaaatgcaattcaaaaactggacgaagatcaaaactggagt |
487 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
50974767 |
ttaaattaagcaaagtagta---ttgctattctaataagagaaaatagcaa----gatagatatgaaattcaaaaacaggacgaagatcaaaactggagt |
50974859 |
T |
|
| Q |
488 |
ctgaaacttatgcagaactatagaattgtaagacactacctctaaaatcaagtttgtcaatgtaaaaatgctatctaaatcccttcgcatacctgtcaag |
587 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
50974860 |
ctgaaatttatgcagaactatagaattgtaagacactacctctaaaatcaagtctgtgaatgtaaaaatgctatctaaatcccttcgcatacatgtcaag |
50974959 |
T |
|
| Q |
588 |
acaattaaagacaaagtcagcttaccttaacaatcgcacaaatgcaacatgagtcacacttcaaatcctattatttcatttcaaactaaatttttagagc |
687 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
50974960 |
acaattaaaaacaaagtcagctcaccttaacaatcgcacaaatgcaacatgagtcacacttcaaatcctattatttcatttcaaacaaaatttttagagc |
50975059 |
T |
|
| Q |
688 |
atactatatgcagcacacaaacaaaaat |
715 |
Q |
| |
|
||| |||||||||||||||||||||||| |
|
|
| T |
50975060 |
ataatatatgcagcacacaaacaaaaat |
50975087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 227 - 319
Target Start/End: Original strand, 43599977 - 43600071
Alignment:
| Q |
227 |
aaactaagtcgttacagaacatttgaattgaatagttgctattcctgataaaactaattaaatttgcatatgcataagca--acctctatagtac |
319 |
Q |
| |
|
|||||||||||||||| ||||||| ||||| ||||||||||||||| ||||||||||||||||||| |||||| | |||| ||||||||||||| |
|
|
| T |
43599977 |
aaactaagtcgttacaaaacatttaaattgcatagttgctattcctcataaaactaattaaatttgtatatgcctgagcactacctctatagtac |
43600071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 50974358 - 50974402
Alignment:
| Q |
12 |
agagatgcaaatggtctttgttggagctgtttttgttgaagcagt |
56 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
50974358 |
agagatgcaaatggtctttgttggagctgttttccttgaagcagt |
50974402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 227 - 319
Target Start/End: Original strand, 14834014 - 14834108
Alignment:
| Q |
227 |
aaactaagtcgttacagaacatttgaattgaatagttgctattcctgataaaactaattaaatttgcatatgcataagca--acctctatagtac |
319 |
Q |
| |
|
|||||||||||||||| ||||||| ||||| ||||||||||||||| ||||||||||||||||||| |||||| | |||| ||||||||||||| |
|
|
| T |
14834014 |
aaactaagtcgttacaaaacatttaaattgcatagttgctattcctcataaaactaattaaatttgtatatgcctgagcaccacctctatagtac |
14834108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 423 - 465
Target Start/End: Complemental strand, 52589796 - 52589754
Alignment:
| Q |
423 |
taagagaaaatagcaaattagatagaaatgcaattcaaaaact |
465 |
Q |
| |
|
||||| ||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
52589796 |
taagataaagtagcaaattagatagcaatgcaattcaaaaact |
52589754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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