View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0921_low_22 (Length: 301)
Name: NF0921_low_22
Description: NF0921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0921_low_22 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 8e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 87 - 204
Target Start/End: Original strand, 45845629 - 45845746
Alignment:
| Q |
87 |
atgaagctacaagagagtcctacaattgctgaaagttttgcttttgatggcttttgagcaccaagtttgttaccaactctagtggaaacactaaaactta |
186 |
Q |
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| T |
45845629 |
atgaagctacaagtgagtcctacaattgctgaaagttttgcttttgatggcttttgagcaccaagtttgttaccaactctagtggaaacactaaaactta |
45845728 |
T |
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| Q |
187 |
ttgatgatggaaaaatat |
204 |
Q |
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| T |
45845729 |
ttgatgatggaaaaatat |
45845746 |
T |
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Target: scaffold0039 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 179
Target Start/End: Complemental strand, 24488 - 24396
Alignment:
| Q |
87 |
atgaagctacaagagagtcctacaattgctgaaagttttgcttttgatggcttttgagcaccaagtttgttaccaactctagtggaaacacta |
179 |
Q |
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|||||||| |||| |||||| ||||||||||||||||||||||||||||||||| ||||| | ||||||||||||| || ||||||||| |
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| T |
24488 |
atgaagctgaaagaaagtcctgaaattgctgaaagttttgcttttgatggcttttgtgcacctatcatgttaccaactcttgttgaaacacta |
24396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 100 - 184
Target Start/End: Complemental strand, 2990611 - 2990527
Alignment:
| Q |
100 |
agagtcctacaattgctgaaagttttgcttttgatggcttttgagcaccaagtttgttaccaactctagtggaaacactaaaact |
184 |
Q |
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| T |
2990611 |
agagtcctactattgctgcaagttttgctttttgtggattttcagcaccaagttcatttccaactcttgttgaaacaccaaaact |
2990527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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