View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0921_low_27 (Length: 274)
Name: NF0921_low_27
Description: NF0921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0921_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 53 - 238
Target Start/End: Complemental strand, 26785355 - 26785170
Alignment:
| Q |
53 |
gatttgtgtccaagattaaagtaaggtatgtttggaccaattgagtaaatgggaattgtgagctttgattttaaggcatcaattacttgaggttcaagct |
152 |
Q |
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| T |
26785355 |
gatttgtgtccaagattaaagtaaggtatgtttggaccaattgagtaaatgggaattgtgagctttgattttaaggcatcaattacctgaggttcaagct |
26785256 |
T |
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| Q |
153 |
cataaattgaaggtagtaatagatattgtgctttgagaagccattgacaacttttgagagcccattgcaaaatttgatggttgttc |
238 |
Q |
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| T |
26785255 |
cataaattgaaggtagtaatagatattgtgctttgagaatccattgacaacttttgagagaccattgcaaaatttgttggttgttc |
26785170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 56 - 238
Target Start/End: Complemental strand, 26765238 - 26765056
Alignment:
| Q |
56 |
ttgtgtccaagattaaagtaaggtatgtttggaccaattgagtaaatgggaattgtgagctttgattttaaggcatcaattacttgaggttcaagctcat |
155 |
Q |
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| T |
26765238 |
ttgtgtccaagattaaagtaaggtatgtttggaccaattgtgtaaattggaattgtgagctttgattttaatgcatcaattacttgaggttcaagctcat |
26765139 |
T |
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| Q |
156 |
aaattgaaggtagtaatagatattgtgctttgagaagccattgacaacttttgagagcccattgcaaaatttgatggttgttc |
238 |
Q |
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| T |
26765138 |
aaattgaaggtagtaatagatattgtgctttgagaagccattgacaacttttgagagcccattgcaaaatttggtggttgttc |
26765056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 199
Target Start/End: Complemental strand, 31005545 - 31005462
Alignment:
| Q |
116 |
tttgattttaaggcatcaattacttgaggttcaagctcataaattgaaggtagtaatagatattgtgctttgagaagccattga |
199 |
Q |
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| T |
31005545 |
tttgattttaaggtatcaatggcttgagattcaagctcataaattgaagtgaatagaagatattgtgctttgtgaatccattga |
31005462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 197
Target Start/End: Original strand, 32075468 - 32075549
Alignment:
| Q |
116 |
tttgattttaaggcatcaattacttgaggttcaagctcataaattgaaggtagtaatagatattgtgctttgagaagccatt |
197 |
Q |
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| T |
32075468 |
tttgattttaagacatcaatggcttgagattcaagctcataaattgaagagaatagaagatattgtgctttgtgaatccatt |
32075549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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