View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0921_low_3 (Length: 577)
Name: NF0921_low_3
Description: NF0921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0921_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 304 - 439
Target Start/End: Complemental strand, 2928593 - 2928454
Alignment:
| Q |
304 |
caactaacttatactatgaaaaacgcaatagaacagctccaatacacaaatctaagaaactgaaaaactgtcgaaacagtacaccagagattgacagact |
403 |
Q |
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| T |
2928593 |
caactgactgatactaagaaaaacaaaatagaacaactccaatacacaaatctaagaaactgaaaaaccgcccaaacagtacaccagagattgacagact |
2928494 |
T |
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| Q |
404 |
a---gttgaaacag-ctctggaatcatactagaatcacca |
439 |
Q |
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| T |
2928493 |
agttgttgaaacagcccctgcaatcatacttgaatcacca |
2928454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 306 - 362
Target Start/End: Original strand, 3002717 - 3002773
Alignment:
| Q |
306 |
actaacttatactatgaaaaacgcaatagaacagctccaatacacaaatctaagaaa |
362 |
Q |
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| T |
3002717 |
actaactgatactaagaaaaacgcaatagaacagctccaatacacaaatataagaaa |
3002773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 329 - 369
Target Start/End: Original strand, 37200252 - 37200292
Alignment:
| Q |
329 |
caatagaacagctccaatacacaaatctaagaaactgaaaa |
369 |
Q |
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| T |
37200252 |
caatagagcagccccaatacacaaaactaagaaactgaaaa |
37200292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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