View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0921_low_37 (Length: 201)
Name: NF0921_low_37
Description: NF0921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0921_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 5244393 - 5244340
Alignment:
| Q |
57 |
accaatattcctacgacaatctagttttgagacattgaagtctgctaacataag |
110 |
Q |
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| T |
5244393 |
accaatattcctacgacaatctagttttgagacattgaagtttgctagcataag |
5244340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 5244428 - 5244393
Alignment:
| Q |
1 |
acacaacacaacaagacacacttctatcattggtta |
36 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
5244428 |
acacaacacaacaagacacacttctatcattggtta |
5244393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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