View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0921_low_4 (Length: 529)
Name: NF0921_low_4
Description: NF0921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0921_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 40 - 294
Target Start/End: Complemental strand, 9930581 - 9930316
Alignment:
| Q |
40 |
tatttggctatagaaatagacgacacttaaatcttaggagtataaaatacgtgtagttatgtaaatt-----------aacactacattatcaaaaacaa |
128 |
Q |
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| T |
9930581 |
tatttggctatagaaatagacgacacctaaatcttaggagtataaaatacgtgtagttctgtaaattcaatttaatgcaacactacattatcaaaaacaa |
9930482 |
T |
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| Q |
129 |
gtatgataagatatgtcgcttgagtatacaatcgtgagttaatgaaagactttgtcattcaatctttagcatttcatcaaatttagtcaccactacaaga |
228 |
Q |
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| T |
9930481 |
gtatgataagatatgtcgcttgcgtatacaatcgtgagttaatgaaagactttgtcattcaatctttagcatttcatcaaatttagtcaccactacaaga |
9930382 |
T |
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| Q |
229 |
taatctaagatttgctacaatggttatgctaggaaatgtaaatggtagtgaatgtagctaccattt |
294 |
Q |
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| T |
9930381 |
taatctaagatttgctacaatggttatgctaggaaatgtaaatggtagtgaatgtagctaccattt |
9930316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 383 - 520
Target Start/End: Complemental strand, 9930199 - 9930062
Alignment:
| Q |
383 |
tcaaatctattcactctgaaacacagtatcgcatactctctcactcccgatcttgattgacaccgtcgtcgatctacaccgtcgtagcttgcaccgatca |
482 |
Q |
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| T |
9930199 |
tcaaatctattcactctgaaacacagtatcgcatactctctcactcccgatctcgatcgacaccgtcgttgatctacaccgtcgtagcttgcaccgatca |
9930100 |
T |
|
| Q |
483 |
ccactgtcgccgtagctttcaccaataaccacctatga |
520 |
Q |
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| T |
9930099 |
ccactgtcggcgtagcttgcaccaataaccacctatga |
9930062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 141 - 219
Target Start/End: Complemental strand, 9937393 - 9937315
Alignment:
| Q |
141 |
atgtcgcttgagtatacaatcgtgagttaatgaaagactttgtcattcaatctttagcatttcatcaaatttagtcacc |
219 |
Q |
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| T |
9937393 |
atgtcacttgtgtatacaatcgtgagttaatgaaagactttgtcattcaatctttagcatttcatcaaatttagtcacc |
9937315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 19649862 - 19649910
Alignment:
| Q |
217 |
accactacaagataatctaagatttgctacaatggttatgctaggaaat |
265 |
Q |
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| T |
19649862 |
accactacaagaaaatctaagatttgctactatgactgtgctaggaaat |
19649910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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