View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0922_high_27 (Length: 315)
Name: NF0922_high_27
Description: NF0922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0922_high_27 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 73 - 315
Target Start/End: Complemental strand, 40785680 - 40785438
Alignment:
| Q |
73 |
gagcacagacaaaagaccggcttcagctccaagtgcaatgataaggatgttgaagattaagtaaaggtaagtaggcctgagagaggaaggtaataagggt |
172 |
Q |
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| T |
40785680 |
gagcaccgacaaaagaccggcttcagctccaagtgcaatgataaggatgttgaagattaagtaaaggtaagtaggcctgagagaggaaggtaacaagggt |
40785581 |
T |
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| Q |
173 |
gtgatcacaaggagaagaagtaagatagagagaactataacttgagatttattaactttgttcatggtcatcttgataatagagaaagataaagggaatt |
272 |
Q |
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| T |
40785580 |
gtgatcacaaggagaagaagtaagatagagagaactataacttgagatttattaactttgttcatggtcatcttgataatagagaaagataaagggaatt |
40785481 |
T |
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| Q |
273 |
agacttagtggtataggaaaaagtagtaggaagaataaaagca |
315 |
Q |
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| T |
40785480 |
agacttagtggtataggaaaaagtagtaggaagaataaaagca |
40785438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 92 - 243
Target Start/End: Complemental strand, 40793416 - 40793265
Alignment:
| Q |
92 |
gcttcagctccaagtgcaatgataaggatgttgaagattaagtaaaggtaagtaggcctgagagaggaaggtaataagggtgtgatcacaaggagaagaa |
191 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||| ||| | |||||||| |||||||||||||||||||||| | |
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| T |
40793416 |
gcttcagctccaagtgcaatgataaggaggttgaagattaagtaaaggtaactgggcctaagaaaagaaggtaagaagggtgtgatcacaaggagaaaag |
40793317 |
T |
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| Q |
192 |
gtaagatagagagaactataacttgagatttattaactttgttcatggtcat |
243 |
Q |
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| T |
40793316 |
ctaggaaagagagaactattacttgagatttatcaactttgttcatggtcat |
40793265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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