View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0922_high_37 (Length: 251)
Name: NF0922_high_37
Description: NF0922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0922_high_37 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 2902318 - 2902094
Alignment:
| Q |
16 |
atataaccagattctactttctcagcctttgttgtttctttactttgcaattagtctcataaccatgctttctttggtctttcagagtatcttgacttat |
115 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2902318 |
atataaccagattctactttctcagcttttgttgtttctttactttgcaattagtctcataaccatgctttctttggtctttcagagtatcttgacttat |
2902219 |
T |
|
| Q |
116 |
ctccatattttcactagcaaaaagaaacatatgactatcctcaaagatgtaagtggaatagtcaaacctcgcaggatgacacttcttcttggtcctccaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2902218 |
ctccatattttcactagcaaaaagaaacatatgactatcctcaaagatgtaagtggaatagtcaaacctcgcaggatgacactgcttcttggtcctccaa |
2902119 |
T |
|
| Q |
216 |
gttctggaaagaccacacttctttt |
240 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
2902118 |
gttctggaaagaccacacttctttt |
2902094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 84 - 240
Target Start/End: Original strand, 2882760 - 2882916
Alignment:
| Q |
84 |
tttctttggtctttcagagtatcttgacttatctccatattttcactagcaaaaagaaacatatgactatcctcaaagatgtaagtggaatagtcaaacc |
183 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||| |||| |||| ||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2882760 |
tttctttggtctttcagagtatcttgatttccctccatattctcacaagcagaaagaaacaaatgactatccttaaagatgtaagtggaatagtcaaacc |
2882859 |
T |
|
| Q |
184 |
tcgcaggatgacacttcttcttggtcctccaagttctggaaagaccacacttctttt |
240 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2882860 |
tcgcaggatgacactgcttcttggtcctccaagttctggaaagaccacacttctttt |
2882916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 133 - 240
Target Start/End: Original strand, 2872696 - 2872803
Alignment:
| Q |
133 |
caaaaagaaacatatgactatcctcaaagatgtaagtggaatagtcaaacctcgcaggatgacacttcttcttggtcctccaagttctggaaagaccaca |
232 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||| |||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
2872696 |
caaaaagaaacatatgactatccttaaagatgtaagtggaatagtcaaacctggtaggatggcactgcttcttggtcctccaagttccggaaagaccaca |
2872795 |
T |
|
| Q |
233 |
cttctttt |
240 |
Q |
| |
|
|||||||| |
|
|
| T |
2872796 |
cttctttt |
2872803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 240
Target Start/End: Complemental strand, 44226733 - 44226651
Alignment:
| Q |
158 |
aaagatgtaagtggaatagtcaaacctcgcaggatgacacttcttcttggtcctccaagttctggaaagaccacacttctttt |
240 |
Q |
| |
|
|||||||| || ||||| || |||||||| ||||||||||| ||| | |||||||| |||| |||||||||||||||||||| |
|
|
| T |
44226733 |
aaagatgttagcggaatcgttaaacctcgtaggatgacactacttttaggtcctcctggttcaggaaagaccacacttctttt |
44226651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 237
Target Start/End: Complemental strand, 44237531 - 44237452
Alignment:
| Q |
158 |
aaagatgtaagtggaatagtcaaacctcgcaggatgacacttcttcttggtcctccaagttctggaaagaccacacttct |
237 |
Q |
| |
|
|||||||| || ||||| || |||||||| ||||||||||| ||| | |||||||| |||| ||||||||||| ||||| |
|
|
| T |
44237531 |
aaagatgttagcggaattgttaaacctcgtaggatgacactacttttaggtcctcctggttcaggaaagaccacgcttct |
44237452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 39592926 - 39592876
Alignment:
| Q |
187 |
caggatgacacttcttcttggtcctccaagttctggaaagaccacacttct |
237 |
Q |
| |
|
|||||||||| | ||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
39592926 |
caggatgacattgcttctgggacctccaagttctggaaagaccacacttct |
39592876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 374 times since January 2019
Visitors: 6703