View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0922_high_7 (Length: 473)
Name: NF0922_high_7
Description: NF0922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0922_high_7 |
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| [»] scaffold1325 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 415; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 29 - 447
Target Start/End: Complemental strand, 44804202 - 44803784
Alignment:
| Q |
29 |
agtccattggtcatttattgaaaattcatatacaaagtatccacagtatgctagctgcccacataaaataactataactgattaaatatccgaaagtaaa |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
44804202 |
agtccattggtcatttattgaaaattcatatacaaagtatccacagtatgctagctgcccacataaaataactataactgattaaatatcggaaagtaaa |
44804103 |
T |
|
| Q |
129 |
tgaataatactactcctttcaactttttacatgatgtattttttgttagcgatattaaatagataattagaggaataggatattaatcttttactggttt |
228 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44804102 |
tgaataatactactcctttcaactttttacatgatgtattttttgttagcgatattaaatagataattagaggaataggatattaatcttttactggttt |
44804003 |
T |
|
| Q |
229 |
tttgtattagatttgtgtgatgggagatatcataacaacagttttgtttaattccctgttgcttatgcatggtaggaggagattgagattgatgctaggg |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44804002 |
tttgtattagatttgtgtgatgggagatatcataacaacagttttgtttaattccctgttgcttatgcatggtaggaggagattgagattgatgctaggg |
44803903 |
T |
|
| Q |
329 |
ttctacgagtaggaaaggccgtagctgttgtaagcgtggagttgaggaagaaaaagacggaccaagtttttgctcaagggcgtcttacaaaatatcttcc |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44803902 |
ttctacgagtaggaaaggccgtagctgttgtaagcgtggagttgaggaagaaaaagacggaccaagtttttgctcaagggcgtcttacaaaatatcttcc |
44803803 |
T |
|
| Q |
429 |
ctttaggagtaaaatgtga |
447 |
Q |
| |
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||||||||||||||||||| |
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| T |
44803802 |
ctttaggagtaaaatgtga |
44803784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 120 - 447
Target Start/End: Complemental strand, 44800264 - 44799935
Alignment:
| Q |
120 |
gaaagtaaatgaataatactactcctttcaactttttacatgatgtattttttgttagcgatattaaatagataattagaggaataggatattaatcttt |
219 |
Q |
| |
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|||||| ||||| |||||||||||||||||| |||||||||| | | || || | | ||||| |||| |||||||||||||||| |||||| |||| |
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| T |
44800264 |
gaaagtgaatgagtaatactactcctttcaattttttacatgctttgttgttatct-gtgatatcaaattgataattagaggaatatgatatt---cttt |
44800169 |
T |
|
| Q |
220 |
tactggttttttgtattagatttgtgtgatgggagatatcataacaacagtt------ttgtttaattccctgttgcttatgca-tggtaggaggagatt |
312 |
Q |
| |
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| |||||||||| ||||| |||||||||||| |||||||| || || |||| |||||||||||||| | ||||||||| ||||||||||||||| |
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| T |
44800168 |
tcctggttttttttattaaatttgtgtgatga-agatatcacaaaaatagttctttctttgtttaattccctatggcttatgcaatggtaggaggagatt |
44800070 |
T |
|
| Q |
313 |
gagattgatgctagggttctacgagtaggaaaggccgtagctgttgtaagcgtggagttgaggaagaaaaagacggaccaagtttttgctcaagggcgtc |
412 |
Q |
| |
|
||||||||| | |||||||||||||||||| || |||||||||||||||| ||||| |||||||||||||||| |||| |||||||||||||||||| |
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| T |
44800069 |
gagattgataacaaggttctacgagtaggaaatgctatagctgttgtaagcgtagagttcaggaagaaaaagacgggccaaatttttgctcaagggcgtc |
44799970 |
T |
|
| Q |
413 |
ttacaaaatatcttccctttaggagtaaaatgtga |
447 |
Q |
| |
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||| || |||||||||||| |||||||||||| |
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| T |
44799969 |
ataccaagtatcttccctttgtcagtaaaatgtga |
44799935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 301 - 429
Target Start/End: Complemental strand, 44797022 - 44796894
Alignment:
| Q |
301 |
taggaggagattgagattgatgctagggttctacgagtaggaaaggccgtagctgttgtaagcgtggagttgaggaagaaaaagacggaccaagtttttg |
400 |
Q |
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||||||||||||||||||||| | ||||||||| || |||||||||| ||||||||| ||||||||||||||||||||||||| || | ||||||||||| |
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| T |
44797022 |
taggaggagattgagattgataccagggttctaagactaggaaaggctgtagctgttctaagcgtggagttgaggaagaaaaaaactggccaagtttttg |
44796923 |
T |
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| Q |
401 |
ctcaagggcgtcttacaaaatatcttccc |
429 |
Q |
| |
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|||||||||||| |||||||| ||||||| |
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| T |
44796922 |
ctcaagggcgtcatacaaaatttcttccc |
44796894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 307 - 447
Target Start/End: Complemental strand, 44792121 - 44791981
Alignment:
| Q |
307 |
gagattgagattgatgctagggttctacgagtaggaaaggccgtagctgttgtaagcgtggagttgaggaagaaaaagacggaccaagtttttgctcaag |
406 |
Q |
| |
|
|||||||||||||||||||| ||| ||||| |||||||||| ||||||||||||||||||||||| | |||||||||||| | |||||||||||||||| |
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| T |
44792121 |
gagattgagattgatgctagagttttacgaataggaaaggctgtagctgttgtaagcgtggagttcaagaagaaaaagactggacaagtttttgctcaag |
44792022 |
T |
|
| Q |
407 |
ggcgtcttacaaaatatcttccctttaggagtaaaatgtga |
447 |
Q |
| |
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|||||| ||| |||||| |||||||| |||||||||||| |
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| T |
44792021 |
ggcgtcataccaaatatattccctttgtaagtaaaatgtga |
44791981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 215 - 447
Target Start/End: Complemental strand, 44783894 - 44783662
Alignment:
| Q |
215 |
tcttttactggttttttgtattagatttgtgtgatgggagatatcataacaacagttt-tgtttaattccctgttgcttatgcatggtaggaggagattg |
313 |
Q |
| |
|
|||||| ||||||| | |||||||||||||| ||| |||||||| ||||| |||| | ||||| ||| | | ||||||| || ||||| ||||||| |
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| T |
44783894 |
tcttttcctggtttcatatattagatttgtgtaatga-agatatcacaacaatagttaatttttaactccatatggcttatgtttgataggaagagattg |
44783796 |
T |
|
| Q |
314 |
agattgatgctagggttctacgagtaggaaaggccgtagctgttgtaagcgtggagttgaggaagaaaaagacggaccaagtttttgctcaagggcgtct |
413 |
Q |
| |
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|||| || || |||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||| | ||||||||||||||| || |||| |
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| T |
44783795 |
agatagaagcaagggttctacgagtaggaaaggttatagctgttgtaagcatggagtttaggaagaaaaagactggccaagtttttgctcatggacgtca |
44783696 |
T |
|
| Q |
414 |
tacaaaatatcttccctttaggagtaaaatgtga |
447 |
Q |
| |
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||| | ||||||| || ||| |||||||||||| |
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| T |
44783695 |
taccacatatctttccattactagtaaaatgtga |
44783662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 301 - 447
Target Start/End: Complemental strand, 44786761 - 44786615
Alignment:
| Q |
301 |
taggaggagattgagattgatgctagggttctacgagtaggaaaggccgtagctgttgtaagcgtggagttgaggaagaaaaagacggaccaagtttttg |
400 |
Q |
| |
|
||||||||||||||||| |||| || || ||||||||||||||| | |||||||| ||||||||||||| ||||||||||| || | |||| |||||| |
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|
| T |
44786761 |
taggaggagattgagatcgatggcagagtcctacgagtaggaaagactatagctgttataagcgtggagttaaggaagaaaaaaactggccaaatttttg |
44786662 |
T |
|
| Q |
401 |
ctcaagggcgtcttacaaaatatcttccctttaggagtaaaatgtga |
447 |
Q |
| |
|
|||| ||||||| ||| |||||| | ||||||| |||||||||||| |
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|
| T |
44786661 |
ctcaggggcgtcataccaaatatataccctttatcagtaaaatgtga |
44786615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 300 - 447
Target Start/End: Complemental strand, 44788440 - 44788293
Alignment:
| Q |
300 |
gtaggaggagattgagattgatgctagggttctacgagtaggaaaggccgtagctgttgtaagcgtggagttgaggaagaaaaagacggaccaagttttt |
399 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||| ||| |||| | |||||||||||||||||||| |||||||||||||| | |||| ||||| |
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|
| T |
44788440 |
gtaggaggagattgagatcgatgctaaagttctacgagcagggaagggtatggctgttgtaagcgtggagttcaggaagaaaaagactggccaaattttt |
44788341 |
T |
|
| Q |
400 |
gctcaagggcgtcttacaaaatatcttccctttaggagtaaaatgtga |
447 |
Q |
| |
|
||||| || |||| ||| |||||| || |||||| | |||||||||| |
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|
| T |
44788340 |
gctcagggacgtcataccaaatatatttcctttatcactaaaatgtga |
44788293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 95 - 168
Target Start/End: Complemental strand, 44797169 - 44797096
Alignment:
| Q |
95 |
aataactataactgattaaatatccgaaagtaaatgaataatactactcctttcaactttttacatgatgtatt |
168 |
Q |
| |
|
||||| ||| |||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
44797169 |
aataattatgactgattaaatatctgaaagtaaatgaataataccactcctttcaattttttacatgatgtatt |
44797096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1325 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold1325
Description:
Target: scaffold1325; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 179 - 354
Target Start/End: Original strand, 1828 - 2006
Alignment:
| Q |
179 |
gatattaaatagataattagaggaataggatattaatcttttactggttttttgtattagatttgtgtgatgggagatatcataacaacagtt------t |
272 |
Q |
| |
|
||||| |||| ||||||||||||||| ||||||| ||||| | |||||||||||||| |||||||||||| |||||||| | | |||| | |
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| T |
1828 |
gatatcaaattgataattagaggaatgggatatt---cttttcccggttttttgtattaaatttgtgtgatga-agatatcacgaacatagttatttttt |
1923 |
T |
|
| Q |
273 |
tgtttaattccctgttgcttatgca-tggtaggaggagattgagattgatgctagggttctacgagtaggaaaggccgtagct |
354 |
Q |
| |
|
||||||||||||| | ||||||| | ||||||||||||||| |||||||| | | ||||||| ||||||||||||| |||||| |
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|
| T |
1924 |
tgtttaattccctatggcttatgtaatggtaggaggagattcagattgataccaaggttctatgagtaggaaaggctgtagct |
2006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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