View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0922_low_13 (Length: 452)
Name: NF0922_low_13
Description: NF0922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0922_low_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 74 - 421
Target Start/End: Original strand, 42005440 - 42005787
Alignment:
| Q |
74 |
aaaaccaatttgttgcattgcgaacccaatgcaacaatatcctttataccaagttccaatatatttttaagttgtttaaatagtaatccagaaattaaca |
173 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42005440 |
aaaaccaatttgttgcattgcgaacacaatgcaacaatatcctttataccaagttccaatatatttttaagttgtttaaatagtaatccagaaattaaca |
42005539 |
T |
|
| Q |
174 |
atttcttaacatgtatggggaaatttatgcatttcaggtcctatgtattacaaaggatggtaccactttttctaccaatacaatccaaacggtgcagttt |
273 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42005540 |
atttcttaacatgtctggggaaatttatgcatttcaggtcctatgtattacaaaggatggtaccactttttctaccaatacaatccaaacggtgcagttt |
42005639 |
T |
|
| Q |
274 |
ggggagatatagtttgggggcatgctgtgtcaagggacatgatccattggcttcaccttccactagcaatggtggccgatcaatggtacgatagtaacgg |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42005640 |
ggggagatatagtttgggggcatgctgtgtcaagggacatgatccattggcttcaccttccactagcaatggtggccgatcaatggtacgatagtaacgg |
42005739 |
T |
|
| Q |
374 |
tgtttggacaggctctgctaccatcttacctgacggtcaagtcatcat |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42005740 |
tgtttggacaggctctgctaccatcttacctgacggtcaagtcatcat |
42005787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 42005375 - 42005408
Alignment:
| Q |
21 |
aaaggataaacttgttacaattaattaacttaaa |
54 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
42005375 |
aaaggataaacttgttacaattaattaacttaaa |
42005408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 42676844 - 42676877
Alignment:
| Q |
21 |
aaaggataaacttgttacaattaattaacttaaa |
54 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |
|
|
| T |
42676844 |
aaaggattaacttgttacaattaattaacttaaa |
42676877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 54
Target Start/End: Complemental strand, 12264798 - 12264769
Alignment:
| Q |
25 |
gataaacttgttacaattaattaacttaaa |
54 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
12264798 |
gataaacttgttacaattaattaacttaaa |
12264769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 5902381 - 5902421
Alignment:
| Q |
243 |
ttctaccaatacaatccaaacggtgcagtttggggagatat |
283 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||| |||| |
|
|
| T |
5902381 |
ttctaccaatacaatcctaaaggtgcagtttggggaaatat |
5902421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 417 - 445
Target Start/End: Complemental strand, 31285148 - 31285120
Alignment:
| Q |
417 |
atcatattcatatctgttcatgttcaact |
445 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
31285148 |
atcatattcatatctgttcatgttcaact |
31285120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 283
Target Start/End: Complemental strand, 42875956 - 42875916
Alignment:
| Q |
243 |
ttctaccaatacaatccaaacggtgcagtttggggagatat |
283 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||| |||| |
|
|
| T |
42875956 |
ttctaccaatacaatccaaaaggtgctgtttggggaaatat |
42875916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1130 times since January 2019
Visitors: 6710