View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0922_low_16 (Length: 439)
Name: NF0922_low_16
Description: NF0922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0922_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 117 - 432
Target Start/End: Complemental strand, 31758264 - 31757936
Alignment:
| Q |
117 |
ttatgtgattacaattttaatacattaaaagattatcaacaaaacttatcacatatcaagagactaagatggttgtttaagcata--------------- |
201 |
Q |
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| T |
31758264 |
ttatgtgattacaattttaatacatta--------tcaacaaaacttatcacatatcaagagactaagatggttgtttaagcatattatttttagacata |
31758173 |
T |
|
| Q |
202 |
------aattaaataaggttttgtctgacaaatctttgcttaatttataatcaatcaatcaaaacacaagtaaagaaggttccaagttgtcaaacaacac |
295 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31758172 |
tattagaattaaataaggttttgtttgacaaatctttgcttaatttataatcaatcaatcaaaacacaagtaaagaaggttccaagttgtcaaacaacac |
31758073 |
T |
|
| Q |
296 |
atcgttgttggatggatgcttgtagaaatcaaaccaccaccaattctttggcttttttcaatgaagctatgtatcactatttggacggttttatcagttc |
395 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31758072 |
atcgttgttggatggatgcttgtagaaacgaaaccaccaccaactgtttggcttttttcaatgaagctatgtatcactatttggacggttttatcagttc |
31757973 |
T |
|
| Q |
396 |
ccataattcaatttacttttacttttgatattgttgg |
432 |
Q |
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|||||||||||||||||||||||||||| |||||||| |
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| T |
31757972 |
ccataattcaatttacttttacttttgacattgttgg |
31757936 |
T |
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