View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0922_low_17 (Length: 435)
Name: NF0922_low_17
Description: NF0922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0922_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 282 - 414
Target Start/End: Original strand, 31046290 - 31046422
Alignment:
| Q |
282 |
caaataccaaagcactaaatcactaaacttccatcttcatcttcttctcttcacacactccaatttgacatattgtcgtgaatgaatttgatttgtctct |
381 |
Q |
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| T |
31046290 |
caaataccaaaccactaaatcactacactgccatcttcatcttcttctcttcacacactccaatttaacatattgtcgtgaatgaatttgatttgtctct |
31046389 |
T |
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| Q |
382 |
tcctaccggtttgtttactcatattcttaagaa |
414 |
Q |
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| T |
31046390 |
tcctaccggtttgtttactcatattcttaagaa |
31046422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 31103361 - 31103398
Alignment:
| Q |
159 |
atcatgcaagactattaaatctaataataaaccactaa |
196 |
Q |
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||||| |||||| ||||||||||||||||||||||||| |
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| T |
31103361 |
atcatacaagaccattaaatctaataataaaccactaa |
31103398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 193
Target Start/End: Original strand, 9559283 - 9559317
Alignment:
| Q |
159 |
atcatgcaagactattaaatctaataataaaccac |
193 |
Q |
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|||||||||||||||| |||||||||||||||||| |
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| T |
9559283 |
atcatgcaagactattgaatctaataataaaccac |
9559317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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