View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0922_low_19 (Length: 425)
Name: NF0922_low_19
Description: NF0922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0922_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 42210365 - 42210668
Alignment:
| Q |
1 |
ttcgcaacacatttcatgatggatgcttaggtgcatgagggtactctgagcatataaagacgcccaaaatggcgtgttgaatattaagcatgaaatgtga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||| ||| ||||||||||||||||||||||| |
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| T |
42210365 |
ttcgcaacacatttcatgatggatgcttaggtgcatgagg-tactctgaacatataaagacgctcaaaatgt-gtgctgaatattaagcatgaaatgtga |
42210462 |
T |
|
| Q |
101 |
acgaggagcattatgagtggtctatccatgcgtctcaagttatgtgtataatgtaatgtagttgaccaatttgagtgtcaaagagaagaagtaatannnn |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42210463 |
acgaggagcattatgagtggtctatccatgcgtctcaagttatgtgtataatgtaatgtagttgatcaatttgagtgtcaaagagaagaagtaatatttt |
42210562 |
T |
|
| Q |
201 |
nnnnagaaagacgtaaaagtaatttattgcgaggtaaagggttggataatgtatgaaaaattaactactccctnnnnnnntactcataaatactaatgct |
300 |
Q |
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| T |
42210563 |
ttataggaagacgtaaaagtaatttattgtgaggtaaagggttggataatgtatgaaaaattaactactccctaaaaaaatactcataaatactaatgct |
42210662 |
T |
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| Q |
301 |
ttattt |
306 |
Q |
| |
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|||||| |
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| T |
42210663 |
ttattt |
42210668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 372 - 425
Target Start/End: Original strand, 42210734 - 42210787
Alignment:
| Q |
372 |
tctctaagtttgagaaagtatttttgaaggaggtgagatgaaaataactataaa |
425 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42210734 |
tctctaactttgagaaagtatttttgaaggaggtgagatgaaaataactataaa |
42210787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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