View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0922_low_2 (Length: 846)

Name: NF0922_low_2
Description: NF0922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0922_low_2
NF0922_low_2
[»] chr8 (1 HSPs)
chr8 (34-846)||(36570169-36571003)


Alignment Details
Target: chr8 (Bit Score: 739; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 739; E-Value: 0
Query Start/End: Original strand, 34 - 846
Target Start/End: Original strand, 36570169 - 36571003
Alignment:
Q  34 ggatcatctcatatatcttgcaatattaggaaacttgattgcttgtacttcataatcatattacggaaaagatactatccctgactcc------------ 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                
T  36570169 ggatcatctcatatatcttgcaatattaggaaacttgattgcttgtacttcataatcatattacggaaaagatactatccctgactccttgttggtggtg 36570268  T
Q  122 --------agttcatgtttcttgcctggaaccatctactctttctcgtaaaatgttccttttgctcttaagaatcttcttatcttagttcataggtgaca 213  Q
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36570269 atgactccagttcatgtttcttgcctggaaccatctactctttctcgcaaaatgttccttttgctcttaagaatcttcttatcttagttcataggtgaca 36570368  T
Q  214 attagtgtgcagcgtataacaaataaaaaatttagtgcacggaaggaaaatgaactaagaatccattaacagtctccttagaatctaca--gtgtcatac 311  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||    
T  36570369 attagtgtgcagcgtataacaaacaaaaaatttagtgcacggaaggaaaatgaactaagaatccattaacattctccttagaatctacacagtgtcatac 36570468  T
Q  312 caaacttttcactccatcctttgttatcaaggatctgcagtgtataataaacaaaaatttccactgatattcatatctttttccttcctcagtattttca 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36570469 caaacttttcactccatcctttgttatcaaggatctgcagtgtataataaacaaaaatttccactgatattcatatctttttccttcctcagtattttca 36570568  T
Q  412 gtgtaaactattttaaactttctaatgaacaaatttataaataaacaatgttctactaccaataatccccacaggaacatatgccattcttaaagtgatg 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36570569 gtgtaaactattttaaactttctaatgaacaaatttataaataaacaatgttctactaccaataatccccacaggaacatatgccattcttaaagtgatg 36570668  T
Q  512 aaaacggctagaatctctgacaacaatctctctgttaacaatctttgccataagtgttattgcagtgtgacaatccccacatacacgtagatttttcatt 611  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  36570669 aaaacggctagaatctctgacaacaatctctctgttaacaatctttgccataagcgttattgcagtatgacaatccccacatacacgtagatttttcatt 36570768  T
Q  612 atagttattgtacttccttccacagtgctaagcaatccaaatgcaattgcaagcctttcactatggtatgataacatttcttcattttgctcaatttcaa 711  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36570769 atagttattgtacttccttccacagtgctaagcaatccaaatgcaattgcaagcctttcactatggtatgataacatttcttcattttgctcaatttcaa 36570868  T
Q  712 catcatgcaaggcaaattgttgatcaggaatataacccagttctcttaactttactcctaaccacactaacttttcatagatttcctcggttagaggatg 811  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36570869 catcatgcaaggcaaattgttgatcaggaatataacccagttctcttaactttactcctaaccacactaacttttcatagatttcctcggttagaggatg 36570968  T
Q  812 ggacctatctgcagacagaaattcatgcctcattc 846  Q
    |||||||||||||||||||||||||||||||||||    
T  36570969 ggacctatctgcagacagaaattcatgcctcattc 36571003  T

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