View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0922_low_21 (Length: 411)

Name: NF0922_low_21
Description: NF0922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0922_low_21
NF0922_low_21
[»] chr7 (2 HSPs)
chr7 (1-236)||(48443226-48443461)
chr7 (323-400)||(48443047-48443124)


Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 48443461 - 48443226
Alignment:
Q  1 gtattcttccaacatagtgaatggcaactcatttcccaaatcaatcggcccaatgctttctttcatcaataactctgagaatggagcttgaaagcctgcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48443461 gtattcttccaacatagtgaatggcaactcatttcccaaatcaatcggcccaatgctttctttcatcaataactctgagaatggagcttgaaagcctgcc 48443362  T
Q  101 ttttcaagattaccaccgttctctgggacgaccatcagggaatgatggaacaaggaccttttcattattctgtcttgcgtcttgaactcgtgtaattgtc 200  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48443361 ttttcaagattaccaccgttctctggtacgaccatcagggaatgatggaacaaggaccttttcattattctgtcttgcgtcttgaactcgtgtaattgtc 48443262  T
Q  201 tttctcttttcaatttccgatgtttctgcctcctcg 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  48443261 tttctcttttcaatttccgatgtttctgcctcctcg 48443226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 323 - 400
Target Start/End: Complemental strand, 48443124 - 48443047
Alignment:
Q  323 tgaccattcttgttcctcttcaccactttcatcctgtctgctctcaatatcattctctcccatcccatctccatctct 400  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  48443124 tgaccattcttgttcctcttcaccactttcatcctgtctgttctcaatatcattctctcccatcccatctccatctct 48443047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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