View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0922_low_24 (Length: 404)

Name: NF0922_low_24
Description: NF0922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0922_low_24
NF0922_low_24
[»] chr8 (7 HSPs)
chr8 (176-375)||(9662049-9662253)
chr8 (12-109)||(9662322-9662419)
chr8 (45-107)||(24768658-24768720)
chr8 (178-236)||(15568711-15568770)
chr8 (190-239)||(1553968-1554020)
chr8 (178-236)||(19152440-19152500)
chr8 (176-238)||(25653701-25653765)
[»] chr7 (4 HSPs)
chr7 (45-102)||(26254756-26254813)
chr7 (176-238)||(12005261-12005325)
chr7 (176-236)||(442848-442910)
chr7 (176-236)||(47370466-47370529)
[»] chr5 (3 HSPs)
chr5 (45-102)||(6117705-6117762)
chr5 (176-237)||(8855678-8855741)
chr5 (176-235)||(12147908-12147970)
[»] chr4 (5 HSPs)
chr4 (176-237)||(46523222-46523284)
chr4 (176-238)||(12388083-12388146)
chr4 (177-239)||(24675281-24675345)
chr4 (45-102)||(29104280-29104337)
chr4 (190-232)||(31068719-31068763)
[»] chr6 (3 HSPs)
chr6 (177-236)||(29942526-29942586)
chr6 (191-236)||(16659791-16659837)
chr6 (45-102)||(34414469-34414526)
[»] chr1 (2 HSPs)
chr1 (180-240)||(22791604-22791666)
chr1 (45-102)||(21770874-21770931)
[»] chr2 (6 HSPs)
chr2 (180-235)||(31989350-31989407)
chr2 (176-237)||(43830501-43830565)
chr2 (45-74)||(16204534-16204563)
chr2 (176-238)||(38128075-38128139)
chr2 (190-237)||(18386591-18386641)
chr2 (189-237)||(30728932-30728980)
[»] chr3 (3 HSPs)
chr3 (45-101)||(2985697-2985753)
chr3 (190-239)||(20078353-20078404)
chr3 (190-241)||(26932534-26932586)


Alignment Details
Target: chr8 (Bit Score: 128; Significance: 5e-66; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 176 - 375
Target Start/End: Complemental strand, 9662253 - 9662049
Alignment:
Q  176 tattttacaaggaggaaaaccagaaatagcttatattacaggg-taaaacactattaaccctttaatctatttcaataaaaacttttgagtnnnnnnnn- 273  Q
    |||||||||| | | ||||||||||||| |||||||||||| | ||||||||||||||| |||||||||||||||||| ||||||||||||             
T  9662253 tattttacaaagggaaaaaccagaaataacttatattacagagctaaaacactattaacactttaatctatttcaatacaaacttttgagtcaaaaaata 9662154  T
Q  274 ---taaaattcaattcaatatatacttttcttttcccttttccttcacaaaacacgtttccaacaaaattcccctgtcccatacctccacaaacaaaact 370  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9662153 aaataaaattcaattcaatatatacttttcttttcccttttccttcacaaaacacgtttccaacaaaattcccctgtcccatacctccacaaacaaaact 9662054  T
Q  371 ccaac 375  Q
    |||||    
T  9662053 ccaac 9662049  T

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Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 9662419 - 9662322
Alignment:
Q  12 agagatggagaggcgtggtgtgtgattggtgatttttaactgtacaaaatcaaagatatggcaaaagattaacggaaatttgctcaaattacaaggaa 109  Q
    |||||||||| ||||||||||||| |||||||||||||||  ||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||    
T  9662419 agagatggaggggcgtggtgtgtgcttggtgatttttaaccatacaaaatcaaagatatggcaaagggttaaccgaaatttgctcaaattacaaggaa 9662322  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 107
Target Start/End: Original strand, 24768658 - 24768720
Alignment:
Q  45 ttttaactgtacaaaatcaaagatatggcaaaagattaacggaaatttgctcaaattacaagg 107  Q
    |||| ||||||||||||| ||||||||||||  | | ||| ||||||||||||||||||||||    
T  24768658 ttttgactgtacaaaatcgaagatatggcaaggggtaaaccgaaatttgctcaaattacaagg 24768720  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 236
Target Start/End: Complemental strand, 15568770 - 15568711
Alignment:
Q  178 ttttacaaggaggaaaaccagaaatagcttatattacag-ggtaaaacactattaaccct 236  Q
    ||||||| || |||||| | ||||||||||||||||||| |||||| |||||||||||||    
T  15568770 ttttacagggtggaaaatcggaaatagcttatattacagaggtaaatcactattaaccct 15568711  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 1553968 - 1554020
Alignment:
Q  190 gaaaaccagaaatagcttatattacagg---gtaaaacactattaacccttta 239  Q
    |||||||||||||||| |||||||||||   | ||||||||||||||||||||    
T  1553968 gaaaaccagaaatagcctatattacaggggtgaaaaacactattaacccttta 1554020  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 19152440 - 19152500
Alignment:
Q  178 ttttacaaggaggaaaaccagaaatagcttatattacaggg--taaaacactattaaccct 236  Q
    |||||||||| | |||||| |||||| | ||||||||||||  ||||||||||||||||||    
T  19152440 ttttacaaggggcaaaaccggaaataacatatattacaggggttaaaacactattaaccct 19152500  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 25653765 - 25653701
Alignment:
Q  176 tattttacaaggaggaaaaccagaaatagcttatattacaggg--taaaacactattaacccttt 238  Q
    ||||||||| || ||||||||| ||||  | ||||||||||||  ||||||||||||||||||||    
T  25653765 tattttacaggggggaaaaccaaaaatgacctatattacagggggtaaaacactattaacccttt 25653701  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 26254813 - 26254756
Alignment:
Q  45 ttttaactgtacaaaatcaaagatatggcaaaagattaacggaaatttgctcaaatta 102  Q
    |||| ||||||||||||| ||||||||||| ||| ||||| |||||||||||||||||    
T  26254813 ttttgactgtacaaaatcgaagatatggcagaaggttaaccgaaatttgctcaaatta 26254756  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 12005325 - 12005261
Alignment:
Q  176 tattttacaaggaggaaaaccagaaatagcttatattacaggg--taaaacactattaacccttt 238  Q
    |||||||||||| |||||||  ||||| || ||||||||||||  ||||||||||||||||||||    
T  12005325 tattttacaagggggaaaactggaaatggcctatattacagggggtaaaacactattaacccttt 12005261  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 442848 - 442910
Alignment:
Q  176 tattttacaaggaggaaaaccagaaatagcttatattaca--gggtaaaacactattaaccct 236  Q
    ||||||||||||||||||||   |||| || |||||||||  |||||||||||||||||||||    
T  442848 tattttacaaggaggaaaactgaaaatggcctatattacagggggtaaaacactattaaccct 442910  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 47370466 - 47370529
Alignment:
Q  176 tattttacaaggaggaaaaccagaaatagcttatattacag---ggtaaaacactattaaccct 236  Q
    |||||||||||| |||||||  ||||| || ||||||||||   ||||||||||||||||||||    
T  47370466 tattttacaagggggaaaactggaaatggcctatattacagggaggtaaaacactattaaccct 47370529  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 6117705 - 6117762
Alignment:
Q  45 ttttaactgtacaaaatcaaagatatggcaaaagattaacggaaatttgctcaaatta 102  Q
    |||| ||||||||||||| ||||||||||| | ||| |||||||||||||||||||||    
T  6117705 ttttgactgtacaaaatcgaagatatggcagaggataaacggaaatttgctcaaatta 6117762  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 8855678 - 8855741
Alignment:
Q  176 tattttacaaggaggaaaaccagaaatagcttatattacag--ggtaaaacactattaaccctt 237  Q
    |||||||||||| |||||| | |||||  ||||||||||||  |||||||||||||||||||||    
T  8855678 tattttacaagggggaaaatcggaaatgacttatattacaggaggtaaaacactattaaccctt 8855741  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 235
Target Start/End: Complemental strand, 12147970 - 12147908
Alignment:
Q  176 tattttacaaggaggaaaaccagaaatagcttatattacag---ggtaaaacactattaaccc 235  Q
    |||||||||||| | ||||||||||||  | ||||||||||   |||||||||||||||||||    
T  12147970 tattttacaaggggtaaaaccagaaatgacctatattacagggtggtaaaacactattaaccc 12147908  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 46523222 - 46523284
Alignment:
Q  176 tattttacaaggaggaaaaccagaaatagcttatattaca-gggtaaaacactattaaccctt 237  Q
    ||||||| | |||||||||||| ||||| ||||||||||| ||||||||||| ||||||||||    
T  46523222 tattttaaagggaggaaaaccaaaaataacttatattacaggggtaaaacaccattaaccctt 46523284  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 12388146 - 12388083
Alignment:
Q  176 tattttacaaggaggaaaaccagaaatagcttatattacaggg-taaaacactattaacccttt 238  Q
    |||||||||||| | |||||| |||||  | |||||||||||| ||||||||||||||||||||    
T  12388146 tattttacaaggggtaaaaccggaaatgacctatattacaggggtaaaacactattaacccttt 12388083  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 239
Target Start/End: Complemental strand, 24675345 - 24675281
Alignment:
Q  177 attttacaaggaggaaaaccagaaatagcttatattacag--ggtaaaacactattaacccttta 239  Q
    ||||||||||||| |||| |  ||||||| ||||||||||  ||||||||| |||||||||||||    
T  24675345 attttacaaggagtaaaatcctaaatagcctatattacaggaggtaaaacaatattaacccttta 24675281  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 29104280 - 29104337
Alignment:
Q  45 ttttaactgtacaaaatcaaagatatggcaaaagattaacggaaatttgctcaaatta 102  Q
    |||||||||||||||||| |||||||||||   | | ||| |||||||||||||||||    
T  29104280 ttttaactgtacaaaatcgaagatatggcagggggtaaaccgaaatttgctcaaatta 29104337  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 31068719 - 31068763
Alignment:
Q  190 gaaaaccagaaatagcttatattacagggt--aaaacactattaa 232  Q
    |||||||||||||||| |||||||||||||  |||||||||||||    
T  31068719 gaaaaccagaaatagcctatattacagggtgaaaaacactattaa 31068763  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 236
Target Start/End: Complemental strand, 29942586 - 29942526
Alignment:
Q  177 attttacaaggaggaaaaccagaaatagcttatattaca-gggtaaaacactattaaccct 236  Q
    |||||||| || |||||||   ||||||||||||||||| |||||||||||||||||||||    
T  29942586 attttacagggtggaaaactgaaaatagcttatattacaggggtaaaacactattaaccct 29942526  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 236
Target Start/End: Original strand, 16659791 - 16659837
Alignment:
Q  191 aaaaccagaaatagcttatattacaggg-taaaacactattaaccct 236  Q
    |||||| |||||| |||||||||||||| ||||||||||||||||||    
T  16659791 aaaaccggaaataacttatattacaggggtaaaacactattaaccct 16659837  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 34414526 - 34414469
Alignment:
Q  45 ttttaactgtacaaaatcaaagatatggcaaaagattaacggaaatttgctcaaatta 102  Q
    |||||||||||||||||| |||||||| || | ||| ||  |||||||||||||||||    
T  34414526 ttttaactgtacaaaatcgaagatatgacagaggataaatcgaaatttgctcaaatta 34414469  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 22791666 - 22791604
Alignment:
Q  180 ttacaaggaggaaaaccagaaatagcttatattacag--ggtaaaacactattaaccctttaa 240  Q
    ||||| |||||||||||| |||||  |||||||||||  |||||||||||| |||||||||||    
T  22791666 ttacagggaggaaaaccataaatattttatattacagagggtaaaacactactaaccctttaa 22791604  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 21770874 - 21770931
Alignment:
Q  45 ttttaactgtacaaaatcaaagatatggcaaaagattaacggaaatttgctcaaatta 102  Q
    |||| ||||||||||||| ||||||||||| | | | ||| |||||||||||||||||    
T  21770874 ttttgactgtacaaaatcgaagatatggcagagggtaaaccgaaatttgctcaaatta 21770931  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 235
Target Start/End: Complemental strand, 31989407 - 31989350
Alignment:
Q  180 ttacaaggaggaaaaccagaaatagcttatattaca--gggtaaaacactattaaccc 235  Q
    ||||||||||| ||||| ||||| || |||||||||  ||||||||||||||||||||    
T  31989407 ttacaaggaggtaaaccggaaatggcctatattacagggggtaaaacactattaaccc 31989350  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 237
Target Start/End: Complemental strand, 43830565 - 43830501
Alignment:
Q  176 tattttacaaggaggaaaaccagaaatagcttatattacaggg---taaaacactattaaccctt 237  Q
    |||||||||||| ||||||||||||||| | || |||||||||   |||| ||||||||||||||    
T  43830565 tattttacaagggggaaaaccagaaataacctaaattacagggagttaaagcactattaaccctt 43830501  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 74
Target Start/End: Complemental strand, 16204563 - 16204534
Alignment:
Q  45 ttttaactgtacaaaatcaaagatatggca 74  Q
    ||||||||||||||||||||||||||||||    
T  16204563 ttttaactgtacaaaatcaaagatatggca 16204534  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 38128075 - 38128139
Alignment:
Q  176 tattttacaaggaggaaaaccagaaatagcttatattaca--gggtaaaacactattaacccttt 238  Q
    ||||||||| || |||||||  |||||| |||||||||||  |||||||| ||||||||||||||    
T  38128075 tattttacaggggggaaaactggaaataacttatattacagggggtaaaagactattaacccttt 38128139  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 18386591 - 18386641
Alignment:
Q  190 gaaaaccagaaatagcttatattacagg---gtaaaacactattaaccctt 237  Q
    |||||||| |||||||||||||||||||   | ||||||||||||||||||    
T  18386591 gaaaaccaaaaatagcttatattacaggggtgaaaaacactattaaccctt 18386641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 30728932 - 30728980
Alignment:
Q  189 ggaaaaccagaaatagcttatattacagggtaaaacactattaaccctt 237  Q
    ||||||||| ||||  |||||||||||||||||| ||| ||||||||||    
T  30728932 ggaaaaccaaaaatgacttatattacagggtaaagcaccattaaccctt 30728980  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 2985753 - 2985697
Alignment:
Q  45 ttttaactgtacaaaatcaaagatatggcaaaagattaacggaaatttgctcaaatt 101  Q
    |||| ||||||||||||| | ||||||||| | ||| ||| ||||||||||||||||    
T  2985753 ttttgactgtacaaaatcgatgatatggcagaggataaaccgaaatttgctcaaatt 2985697  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 20078404 - 20078353
Alignment:
Q  190 gaaaaccagaaatagcttatattacagg--gtaaaacactattaacccttta 239  Q
    |||||||| ||||| |||||||| ||||  ||||||||||||||||||||||    
T  20078404 gaaaaccaaaaataacttatattgcaggaggtaaaacactattaacccttta 20078353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 26932534 - 26932586
Alignment:
Q  190 gaaaaccagaaatagcttatattaca-gggtaaaacactattaaccctttaat 241  Q
    ||||||| |||||  | ||||||||| ||||||||||||||||||||||||||    
T  26932534 gaaaaccggaaatgacctatattacaagggtaaaacactattaaccctttaat 26932586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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