View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0922_low_26 (Length: 403)

Name: NF0922_low_26
Description: NF0922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0922_low_26
NF0922_low_26
[»] chr8 (4 HSPs)
chr8 (30-391)||(8871563-8871928)
chr8 (315-372)||(10543978-10544035)
chr8 (331-380)||(4424672-4424721)
chr8 (291-391)||(17834350-17834450)
[»] chr6 (2 HSPs)
chr6 (310-391)||(15610155-15610236)
chr6 (341-391)||(5827619-5827669)
[»] chr7 (5 HSPs)
chr7 (291-391)||(26754924-26755024)
chr7 (291-391)||(22911219-22911319)
chr7 (291-391)||(23040027-23040128)
chr7 (341-391)||(13596964-13597014)
chr7 (340-389)||(28544168-28544217)
[»] chr2 (1 HSPs)
chr2 (291-391)||(18579490-18579590)
[»] chr3 (4 HSPs)
chr3 (291-391)||(52585598-52585698)
chr3 (298-389)||(20685459-20685550)
chr3 (341-391)||(53581332-53581382)
chr3 (331-375)||(5561711-5561755)
[»] chr4 (3 HSPs)
chr4 (298-375)||(13501561-13501638)
chr4 (310-388)||(39774909-39774987)
chr4 (291-391)||(48026070-48026170)
[»] chr5 (2 HSPs)
chr5 (331-373)||(25585957-25585999)
chr5 (343-391)||(20174607-20174655)


Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 30 - 391
Target Start/End: Original strand, 8871563 - 8871928
Alignment:
Q  30 ctttattcttctgcaaccccccaaggttatagctacttgcttctttagctaccattattgatgtagctgaatatttgatgaactgcttctgctatgtcat 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8871563 ctttattcttctgcaaccccccaaggttatagctacttgcttctttagctaccattattgatgtagctgaatatttgatgaactgcttctgctatatcat 8871662  T
Q  130 ttgctgtgcctagcttacaatcttcttcaatctgtatcacccatatatacagctcattattgatttatttatcaaataataataaatagaactaataaaa 229  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8871663 ttgctgtgcctagcttacagtcttcttcaatctgtatcacccatatatacagctcattattgatttatttatcaaataataataaatagtactaataaaa 8871762  T
Q  230 aacc--agaaaatttgtcnnnnnnnnnnnnnncttaaaatgtgttcaatgtagcatgtattcc------aatctgaaaacaagctgatgatgtggtcgtc 321  Q
    || |  ||||||||||||              ||||||||||||||||||||| ||||||| |      |||||  |||||||||||||||||||||| |    
T  8871763 aaacttagaaaatttgtc----aaaaaaataacttaaaatgtgttcaatgtagtatgtatttctaccaaaatcttgaaacaagctgatgatgtggtcgcc 8871858  T
Q  322 ttaggtaatttatggaccacctcatttgcttgtgtccctacaaactcaacactaaagttgacataatatt 391  Q
    |||| |||||||||| | ||||||||||||||| |||  |||||||||||||||||||| ||||||||||    
T  8871859 ttagctaatttatgggctacctcatttgcttgtatcctcacaaactcaacactaaagttaacataatatt 8871928  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 315 - 372
Target Start/End: Complemental strand, 10544035 - 10543978
Alignment:
Q  315 ggtcgtcttaggtaatttatggaccacctcatttgcttgtgtccctacaaactcaaca 372  Q
    ||||| ||||| ||||||||| || ||||||||||||||| ||| |||||||||||||    
T  10544035 ggtcgccttagctaatttatgaacaacctcatttgcttgtctccgtacaaactcaaca 10543978  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 380
Target Start/End: Original strand, 4424672 - 4424721
Alignment:
Q  331 ttatggaccacctcatttgcttgtgtccctacaaactcaacactaaagtt 380  Q
    |||||| | ||||||||||||||| ||| |||||||||||||||| ||||    
T  4424672 ttatgggcaacctcatttgcttgtctccgtacaaactcaacactagagtt 4424721  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 391
Target Start/End: Original strand, 17834350 - 17834450
Alignment:
Q  291 aatctgaaaacaagctgatgatgtggtcgtcttaggtaatttatggaccacctcatttgcttgtgtccctacaaactcaacactaaagttgacataatat 390  Q
    |||||| |||| |||||| ||||||| || ||||| |||| |||||     |||||||| |||| |||  ||||||||||||||| |||||||||| |||    
T  17834350 aatctggaaactagctgaggatgtggccgccttagctaatctatgggttgtctcatttgtttgtctcctcacaaactcaacactagagttgacatagtat 17834449  T
Q  391 t 391  Q
    |    
T  17834450 t 17834450  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 310 - 391
Target Start/End: Complemental strand, 15610236 - 15610155
Alignment:
Q  310 gatgtggtcgtcttaggtaatttatggaccacctcatttgcttgtgtccctacaaactcaacactaaagttgacataatatt 391  Q
    |||||||||||||||| |||| ||||| | |||||||||| |||| |||  ||||||||||||||| |||||||||| ||||    
T  15610236 gatgtggtcgtcttagctaatctatgggctacctcatttgtttgtctcctcacaaactcaacactagagttgacatagtatt 15610155  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 341 - 391
Target Start/End: Complemental strand, 5827669 - 5827619
Alignment:
Q  341 cctcatttgcttgtgtccctacaaactcaacactaaagttgacataatatt 391  Q
    |||||||||||||| ||| |||||||||||||||| |||||| ||||||||    
T  5827669 cctcatttgcttgtctccttacaaactcaacactagagttgatataatatt 5827619  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 291 - 391
Target Start/End: Complemental strand, 26755024 - 26754924
Alignment:
Q  291 aatctgaaaacaagctgatgatgtggtcgtcttaggtaatttatggaccacctcatttgcttgtgtccctacaaactcaacactaaagttgacataatat 390  Q
    ||||| ||||| || ||| ||||||| || ||||| |||| ||||| |  |||||||||||||| |||  ||||||||||||||| ||||||||||||||    
T  26755024 aatctaaaaactagttgaggatgtggccgccttagataatctatgggctgcctcatttgcttgtctcctcacaaactcaacactatagttgacataatat 26754925  T
Q  391 t 391  Q
    |    
T  26754924 t 26754924  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 291 - 391
Target Start/End: Complemental strand, 22911319 - 22911219
Alignment:
Q  291 aatctgaaaacaagctgatgatgtggtcgtcttaggtaatttatggaccacctcatttgcttgtgtccctacaaactcaacactaaagttgacataatat 390  Q
    |||||| |||| || ||| ||||||| |  ||||| |||| ||||| |  |||||||||||||| ||| ||||||||||| |||| ||||||||||||||    
T  22911319 aatctggaaactagatgaagatgtggcctccttagctaatctatggcctccctcatttgcttgtctccttacaaactcaaaactagagttgacataatat 22911220  T
Q  391 t 391  Q
    |    
T  22911219 t 22911219  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 391
Target Start/End: Original strand, 23040027 - 23040128
Alignment:
Q  291 aatctgaaaacaagctgatgatgtggtcgtcttaggtaatttatggaccacctcatttgcttg-tgtccctacaaactcaacactaaagttgacataata 389  Q
    |||||||||||  ||| | ||||||| |  ||||| |||| ||||| |  ||||||||||||| | ||| |||||||||||||||| |||||||||||||    
T  23040027 aatctgaaaacttgctaaagatgtggcctccttagttaatctatgggctgcctcatttgcttggtctccttacaaactcaacactagagttgacataata 23040126  T
Q  390 tt 391  Q
    ||    
T  23040127 tt 23040128  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 391
Target Start/End: Complemental strand, 13597014 - 13596964
Alignment:
Q  341 cctcatttgcttgtgtccctacaaactcaacactaaagttgacataatatt 391  Q
    |||||||||||||| |||  ||||||||||||||| |||||||||| ||||    
T  13597014 cctcatttgcttgtctcctcacaaactcaacactagagttgacatagtatt 13596964  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 389
Target Start/End: Complemental strand, 28544217 - 28544168
Alignment:
Q  340 acctcatttgcttgtgtccctacaaactcaacactaaagttgacataata 389  Q
    ||||||||||||||| | | |||||||||||||||| |||| ||||||||    
T  28544217 acctcatttgcttgtcttcgtacaaactcaacactagagtttacataata 28544168  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 291 - 391
Target Start/End: Original strand, 18579490 - 18579590
Alignment:
Q  291 aatctgaaaacaagctgatgatgtggtcgtcttaggtaatttatggaccacctcatttgcttgtgtccctacaaactcaacactaaagttgacataatat 390  Q
    |||||| |||| |||||| ||||||| |  ||||| |||| ||||| |  ||||||||| |||| |||  ||||||||||||||||||||||||||||||    
T  18579490 aatctggaaactagctgaagatgtggcctacttagctaatctatgggctgcctcatttgtttgtctcctcacaaactcaacactaaagttgacataatat 18579589  T
Q  391 t 391  Q
    |    
T  18579590 t 18579590  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 291 - 391
Target Start/End: Original strand, 52585598 - 52585698
Alignment:
Q  291 aatctgaaaacaagctgatgatgtggtcgtcttaggtaatttatggaccacctcatttgcttgtgtccctacaaactcaacactaaagttgacataatat 390  Q
    |||||| |||| |||||| ||||||| || ||||| |||| ||||| |  |||||||||||||| ||   || |||||||||||| ||||||||||||||    
T  52585598 aatctggaaactagctgaggatgtggccgccttagttaatctatgggctgcctcatttgcttgtctcatcacgaactcaacactagagttgacataatat 52585697  T
Q  391 t 391  Q
    |    
T  52585698 t 52585698  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 298 - 389
Target Start/End: Complemental strand, 20685550 - 20685459
Alignment:
Q  298 aaacaagctgatgatgtggtcgtcttaggtaatttatggaccacctcatttgcttgtgtccctacaaactcaacactaaagttgacataata 389  Q
    |||| |||||| |||||||||  ||||| |||| ||||| |   ||||||||||||| |||  ||||||||||||||| |||||||||||||    
T  20685550 aaactagctgaagatgtggtctccttagctaatctatgggctgtctcatttgcttgtctcctcacaaactcaacactagagttgacataata 20685459  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 341 - 391
Target Start/End: Complemental strand, 53581382 - 53581332
Alignment:
Q  341 cctcatttgcttgtgtccctacaaactcaacactaaagttgacataatatt 391  Q
    |||||||||||||| ||| ||||||||||| |||| |||||||||||||||    
T  53581382 cctcatttgcttgtctccttacaaactcaaaactagagttgacataatatt 53581332  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 375
Target Start/End: Original strand, 5561711 - 5561755
Alignment:
Q  331 ttatggaccacctcatttgcttgtgtccctacaaactcaacacta 375  Q
    |||||| | ||||||||||||||| ||| ||||||||||||||||    
T  5561711 ttatgggcaacctcatttgcttgtctccgtacaaactcaacacta 5561755  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 298 - 375
Target Start/End: Complemental strand, 13501638 - 13501561
Alignment:
Q  298 aaacaagctgatgatgtggtcgtcttaggtaatttatggaccacctcatttgcttgtgtccctacaaactcaacacta 375  Q
    |||||||||||  ||  ||||| ||| | ||| |||||||| ||||||||||||||| ||| ||||||||||||||||    
T  13501638 aaacaagctgacaatagggtcgcctttgctaacttatggacaacctcatttgcttgtctccgtacaaactcaacacta 13501561  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 388
Target Start/End: Complemental strand, 39774987 - 39774909
Alignment:
Q  310 gatgtggtcgtcttaggtaatttatggaccacctcatttgcttgtgtccctacaaactcaacactaaagttgacataat 388  Q
    ||||||| || ||||| |||| ||||||   ||| ||||| |||| |||  ||||||||||||||||||||||||||||    
T  39774987 gatgtggccgccttagttaatctatggattgccttatttgtttgtctcctcacaaactcaacactaaagttgacataat 39774909  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 391
Target Start/End: Original strand, 48026070 - 48026170
Alignment:
Q  291 aatctgaaaacaagctgatgatgtggtcgtcttaggtaatttatggaccacctcatttgcttgtgtccctacaaactcaacactaaagttgacataatat 390  Q
    ||||| ||||| || ||| || ||||||| ||||| |||| ||||| |  | |||||||||||| |||    ||||||||||||| ||||||||||||||    
T  48026070 aatctaaaaactagttgaagacgtggtcgccttagctaatctatgggctgcttcatttgcttgtctcctcgtaaactcaacactagagttgacataatat 48026169  T
Q  391 t 391  Q
    |    
T  48026170 t 48026170  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 373
Target Start/End: Original strand, 25585957 - 25585999
Alignment:
Q  331 ttatggaccacctcatttgcttgtgtccctacaaactcaacac 373  Q
    |||||||| ||||||||||||||| ||| ||||||||||||||    
T  25585957 ttatggacaacctcatttgcttgtctccgtacaaactcaacac 25585999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 391
Target Start/End: Complemental strand, 20174655 - 20174607
Alignment:
Q  343 tcatttgcttgtgtccctacaaactcaacactaaagttgacataatatt 391  Q
    |||||||||||| |||  ||||||||||||||| | |||||||||||||    
T  20174655 tcatttgcttgtctcctcacaaactcaacactagaattgacataatatt 20174607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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