View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0922_low_27 (Length: 401)
Name: NF0922_low_27
Description: NF0922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0922_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 49 - 394
Target Start/End: Original strand, 473788 - 474125
Alignment:
| Q |
49 |
taaataaacgtgcaatcgtgtttggagagcataagaactttagtttacttcaacaaaaaataataataataaagcctaggattgcatatataaataaggt |
148 |
Q |
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| T |
473788 |
taaataaacgtgcaatcgtgtttggagagcataagaactttagtttacttcaacaaaaaataataataaaaaagcctaggattgtatatataaataaggt |
473887 |
T |
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| Q |
149 |
ttaccat--ctctttatattcacccnnnnnnnnnnnnnnnnnnnctttgagcaacgtgttttggaaagcaaagatgggatgtttagacatggagtattat |
246 |
Q |
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| T |
473888 |
ttaccatatctctttatattcacccaaaaaaaaa----------ctttgagcaacgtgttttggaaagcaaagatgggatgtttagacatggagtattat |
473977 |
T |
|
| Q |
247 |
atgccaataatggttatggtattgatacagtttatatatgcaggtatgaatcttggcataagagtcacccttttggagggtatgagtcccaacgtatttg |
346 |
Q |
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| T |
473978 |
atgccaataatggttatggtattgatacagtttatatatgcaggtatgaatcttggcataagagtcacccttttggagggtatgagtcccaacgtatttg |
474077 |
T |
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| Q |
347 |
tagtataccgtagtgcttttgcaaccatttttcttgctccctttgctt |
394 |
Q |
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| T |
474078 |
tagtataccgtagtgcttttgcaaccatttttcttgctcccattgctt |
474125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 233 - 387
Target Start/End: Original strand, 466498 - 466652
Alignment:
| Q |
233 |
acatggagtattatatgccaataatggttatggtattgatacagtttatatatgcaggtatgaatcttggcataagagtcacccttttggagggtatgag |
332 |
Q |
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| T |
466498 |
acatggagtactacctgccaataatagttatgttgttgatacagttaatatttgcaggtcagactcttggcacaagaatggcacttttggagggtatgag |
466597 |
T |
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| Q |
333 |
tcccaacgtatttgtagtataccgtagtgcttttgcaaccatttttcttgctccc |
387 |
Q |
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| T |
466598 |
tccaaggatatttgtagtataccgtagtgcttttgcaaccattgttcttgctccc |
466652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 206 - 386
Target Start/End: Original strand, 479411 - 479591
Alignment:
| Q |
206 |
tttggaaagcaaagatgggatgtttagacatggagtattatatgccaataatggttatggtattgatacagtttatatatgcaggtatgaatcttggcat |
305 |
Q |
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| T |
479411 |
tttggaaagcaaagatgggatgtttagacatggagtactaccttccaataatggctatggtgttgatagagtttatatatgcaggtttgggtattggcac |
479510 |
T |
|
| Q |
306 |
aagagtcacccttttggagggtatgagtcccaacgtatttgtagtataccgtagtgcttttgcaaccatttttcttgctcc |
386 |
Q |
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| T |
479511 |
aagaattgtatttttgcagggtttgagccctaggatatttgtagtgtaccgtcatgctattgcaaccattcttcttgctcc |
479591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 316 - 386
Target Start/End: Original strand, 445781 - 445851
Alignment:
| Q |
316 |
cttttggagggtatgagtcccaacgtatttgtagtataccgtagtgcttttgcaaccatttttcttgctcc |
386 |
Q |
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| T |
445781 |
cttttggagggtatgagcccggcggtatttgtaatgtaccgtaatgcttttgcaaccatttttcttgctcc |
445851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 205 - 299
Target Start/End: Original strand, 454762 - 454859
Alignment:
| Q |
205 |
ttttggaaagcaaagatgggat---gtttagacatggagtattatatgccaataatggttatggtattgatacagtttatatatgcaggtatgaatct |
299 |
Q |
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| T |
454762 |
ttttggaaagtaaagatgggatattgtttagacatggagtactaccttccagtattggccatggtgttgacacagtttatatattcaggcatgaatct |
454859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 394
Target Start/End: Original strand, 454889 - 454943
Alignment:
| Q |
340 |
gtatttgtagtataccgtagtgcttttgcaaccatttttcttgctccctttgctt |
394 |
Q |
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|||||| |||| |||||| |||||||||||||||| ||||||||||| |||||| |
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| T |
454889 |
gtatttatagtttaccgtcatgcttttgcaaccattcttcttgctcccattgctt |
454943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 233 - 386
Target Start/End: Complemental strand, 27493931 - 27493778
Alignment:
| Q |
233 |
acatggagtattatatgccaataatggttatggtattgatacagtttatatatgcaggtatgaatcttggcataagagtcacccttttggagggtatgag |
332 |
Q |
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| T |
27493931 |
acatggagtactacttaccaataatggttatgttattgatacagttaatatattcaggcttgactcttggtacaagaattgtacttttggagggtttgag |
27493832 |
T |
|
| Q |
333 |
tcccaacgtatttgtagtataccgtagtgcttttgcaaccatttttcttgctcc |
386 |
Q |
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| T |
27493831 |
tccaatggtatttgtagtatatcgctatgcttttgcaaccatttttcttgctcc |
27493778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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