View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0922_low_28 (Length: 400)
Name: NF0922_low_28
Description: NF0922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0922_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 113 - 367
Target Start/End: Complemental strand, 41939851 - 41939597
Alignment:
| Q |
113 |
agtcaccaatgtaattagtgcaaaacatgtccatagctgtcttgtctttatagttaaaacacacatacatcaaactatgactgaaaagattcattttctt |
212 |
Q |
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| T |
41939851 |
agtcaccaatgtaattagtgcaaaacatgtccatagctgtcttgtctttatagttaaaacatacatacatcaaactatgactgaaaagattcattttctt |
41939752 |
T |
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| Q |
213 |
gctcaatttcagagccaccatgttcatcatcttgatcaagacattcgtcaattccataagctttatgtccatttccaaaagccttgatatgatctttaag |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41939751 |
gctcaatttcagagccaccatgttcatcatcttgatcaagacattcgtcaattccataagctttatgtccatttccaaaagccttgatatgatctttaag |
41939652 |
T |
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| Q |
313 |
tgatcttttgtgcttaaaatcggacccacaacaacaataccaaagtttcccacag |
367 |
Q |
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| T |
41939651 |
tgatcttttgtgcttaaaatcggacccacaacaacaataccaaagtttcccacag |
41939597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 277 - 366
Target Start/End: Complemental strand, 36570198 - 36570109
Alignment:
| Q |
277 |
atgtccatttccaaaagccttgatatgatctttaagtgatcttttgtgcttaaaatcggacccacaacaacaataccaaagtttcccaca |
366 |
Q |
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| T |
36570198 |
atgtccacttccaaaagctttgatatgatctttaagagacctcttgtgtttaaaatcagaaccacagatacaataccaaagctttccaca |
36570109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 366
Target Start/End: Original strand, 21035565 - 21035671
Alignment:
| Q |
260 |
tcaattccataagctttatgtccatttccaaaagccttgatatgatctttaagtgatcttttgtgcttaaaatcggacccacaacaacaataccaaagtt |
359 |
Q |
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|||||||||||||| ||| ||| | |||||||| | |||||||||||||| |||| || ||||||||||| || |||||| |||||||||||| | |
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| T |
21035565 |
tcaattccataagcagcatgaccactcccaaaagctcttatatgatctttaagcgatcgcttatgcttaaaatccgaaccacaaagacaataccaaagct |
21035664 |
T |
|
| Q |
360 |
tcccaca |
366 |
Q |
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| ||||| |
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| T |
21035665 |
ttccaca |
21035671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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