View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0922_low_30 (Length: 350)
Name: NF0922_low_30
Description: NF0922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0922_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 36 - 345
Target Start/End: Original strand, 50419784 - 50420093
Alignment:
| Q |
36 |
ctccatataatattcaccttcactgtggctggtttgcttctgcaagaataatcaaccctaaattgttcaagagactatcttttgatgattgtttggtgaa |
135 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50419784 |
ctccatataatattcaccttcactgtggctggtttgcttctgcaagaataatcaaccctaaattgttcaagagactatcttttgatgattgtttggtgaa |
50419883 |
T |
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| Q |
136 |
tggaggaaaacctttaacctctagtcaaatcattagattcacttataccaattcttttgtttatcctcttgcactcaagtctgccaaattttgctgactc |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50419884 |
tggaggaaaacctttaacctctagtcaaatcattagattcacttataccaattcttttgtttatcctcttgcactcaagtctgccaaattttgctgactc |
50419983 |
T |
|
| Q |
236 |
cgaaaaatagtcccgatagattttcttgcaaaaaactaagaacaaaaatgaattcataacacaggagtaatctgcaagaaacttcaagcaaaaaaggcgt |
335 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
50419984 |
cgaaaaatagtcccgatagattttcttgcaaaaaactaagaacaaaaatgaattcataacacaggagtattctgcaagaaacttcaagcaaaaaaggcgt |
50420083 |
T |
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| Q |
336 |
tcatctcact |
345 |
Q |
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|||| ||||| |
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| T |
50420084 |
tcatttcact |
50420093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 36 - 232
Target Start/End: Complemental strand, 13046180 - 13045984
Alignment:
| Q |
36 |
ctccatataatattcaccttcactgtggctggtttgcttctgcaagaataatcaaccctaaattgttcaagagactatcttttgatgattgtttggtgaa |
135 |
Q |
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|||| ||| |||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| | |
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| T |
13046180 |
ctccttatgatatccatcttcactgtggttggtttgcttctgcaagaataatcaaccctaaattgttcaagagactctcttatgatgattgtttggtgca |
13046081 |
T |
|
| Q |
136 |
tggaggaaaacctttaacctctagtcaaatcattagattcacttataccaattcttttgtttatcctcttgcactcaagtctgccaaattttgctga |
232 |
Q |
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| T |
13046080 |
tggagggaagcctttaacttctaaccagattattagattcacttattctaattcttttatgtaccctcttgcattcaagtctgctagattttgctga |
13045984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 53 - 232
Target Start/End: Original strand, 8997075 - 8997251
Alignment:
| Q |
53 |
cttcactgtggctggtttgcttctgcaagaataatcaaccctaaattgttcaagagactatcttttgatgattgtttggtgaatggaggaaaacctttaa |
152 |
Q |
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||||||||||| |||||||||||||||||||||| ||| |||| |||||| |||||||| |||| || | | |||||||||||||||| || ||||| | |
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| T |
8997075 |
cttcactgtggttggtttgcttctgcaagaataaacaatcctagattgtttaagagactctcttatg--gttcgtttggtgaatggagggaagccttt-a |
8997171 |
T |
|
| Q |
153 |
cctctagtcaaatcattagattcacttataccaattcttttgtttatcctcttgcactcaagtctgccaaattttgctga |
232 |
Q |
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| T |
8997172 |
cttctagccaaattattagattcacttattctaattcccttatgtaccctcttgcattcaaatctgctagattttgctga |
8997251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 53 - 232
Target Start/End: Original strand, 9013198 - 9013374
Alignment:
| Q |
53 |
cttcactgtggctggtttgcttctgcaagaataatcaaccctaaattgttcaagagactatcttttgatgattgtttggtgaatggaggaaaacctttaa |
152 |
Q |
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||||||||||| |||||||||||||||||||||| ||| |||| |||||| |||||||| |||| || | | |||||||||||||||| || ||||| | |
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| T |
9013198 |
cttcactgtggttggtttgcttctgcaagaataaacaatcctagattgtttaagagactctcttatg--gttggtttggtgaatggagggaagccttt-a |
9013294 |
T |
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| Q |
153 |
cctctagtcaaatcattagattcacttataccaattcttttgtttatcctcttgcactcaagtctgccaaattttgctga |
232 |
Q |
| |
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| ||||| || || ||||||||||||||| | ||||| || | | ||||||||| |||||||||| | ||||| |||| |
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| T |
9013295 |
cttctagccagattattagattcacttattctaattcccttatgaaacctcttgcattcaagtctgctagattttcctga |
9013374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 111
Target Start/End: Original strand, 8979797 - 8979855
Alignment:
| Q |
53 |
cttcactgtggctggtttgcttctgcaagaataatcaaccctaaattgttcaagagact |
111 |
Q |
| |
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||||||||||| |||||||||||||||||||||| ||| |||| |||||| |||||||| |
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| T |
8979797 |
cttcactgtggttggtttgcttctgcaagaataaacaatcctagattgtttaagagact |
8979855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 97 - 232
Target Start/End: Original strand, 9030892 - 9031024
Alignment:
| Q |
97 |
attgttcaagagactatcttttgatgattgtttggtgaatggaggaaaacctttaacctctagtcaaatcattagattcacttataccaattcttttgtt |
196 |
Q |
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||||||||||||||| |||| || | | |||||||||||||||| || |||||| | ||||| ||||| ||||||||||||||| | ||||| || | |
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| T |
9030892 |
attgttcaagagactctcttatggt--tcgtttggtgaatggagggaagccttta-cttctagccaaattattagattcacttattctaattcccttatg |
9030988 |
T |
|
| Q |
197 |
tatcctcttgcactcaagtctgccaaattttgctga |
232 |
Q |
| |
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| ||||||||| |||||||||| | |||||||||| |
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| T |
9030989 |
tgccctcttgcattcaagtctgctagattttgctga |
9031024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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