View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0922_low_35 (Length: 339)
Name: NF0922_low_35
Description: NF0922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0922_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 97 - 307
Target Start/End: Original strand, 39941662 - 39941872
Alignment:
| Q |
97 |
gagatgaaacgcgtcatgataccgtctataaagcatgctccggcgtctccgtcaacactttttcagcacggttctcctagaaggccaaaattctcatcgc |
196 |
Q |
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| T |
39941662 |
gagatgaaacgcgtcatgataccgtctataaagcatgctccggcgtcgccgtcaacactttttcagcacggttctcctagaaggccgaaattctcatcgc |
39941761 |
T |
|
| Q |
197 |
cgccaccggcgccgaatttgacgcatcttcattcaaacgactcaagggattcacttacacttcctccacctagacctccgccaccacctcctccgcctcg |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
39941762 |
cgccaccggcgccgaatttgacgcatcttcattcaaacgactcaagggattcacttacacttcctccacctagacctccgccaccacctcctccgccgcg |
39941861 |
T |
|
| Q |
297 |
ggtggttagtg |
307 |
Q |
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||||||||||| |
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| T |
39941862 |
ggtggttagtg |
39941872 |
T |
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