View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0922_low_36 (Length: 336)
Name: NF0922_low_36
Description: NF0922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0922_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 30 - 323
Target Start/End: Original strand, 31603107 - 31603400
Alignment:
| Q |
30 |
gttttcatagttttaagccatgtttagattagtttctagagcttctcattccaaacaagtttatgattcttcaaagtcgttatgaagttgtagaagttaa |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31603107 |
gttttcatagttttaagccatgtttagattagtttctagagcttctcattccaaacaagtttatgattcttcaaagtcgttatgaagttgtagaagttaa |
31603206 |
T |
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| Q |
130 |
atcttctaataaaattgagatactgcacagacattattatttgatgttctaactctaaccaaaacagctcactgatagtttgaaaaactaaatcccaatt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31603207 |
atcttctaataaaattgagatactgcacagacattattatttgatgttctaactctaaccaaaacagctcactgatagtttgaaaaactaaatcccaatt |
31603306 |
T |
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| Q |
230 |
caactttaacatagccgcatcattaacggttttgaggaacaaagtccaagaccaccttcagagaaaggagtataaattgtgtcccaagcaacag |
323 |
Q |
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| T |
31603307 |
caactttaacatagccgcattattaacggttttgaggaacaaagtccaagaccaccttcagagaaaggagtataaattgtgtcccaagcaacag |
31603400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 30 - 323
Target Start/End: Original strand, 31605563 - 31605856
Alignment:
| Q |
30 |
gttttcatagttttaagccatgtttagattagtttctagagcttctcattccaaacaagtttatgattcttcaaagtcgttatgaagttgtagaagttaa |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||| |||||||||||| |||||||| |
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| T |
31605563 |
gttttcatagttttaagccatgtttagattagtttctaaagcttctcattcaaaacaaaattatgattcttcaaagtccttatgaagttgttgaagttaa |
31605662 |
T |
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| Q |
130 |
atcttctaataaaattgagatactgcacagacattattatttgatgttctaactctaaccaaaacagctcactgatagtttgaaaaactaaatcccaatt |
229 |
Q |
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| T |
31605663 |
atcttctaataaaattgtgatactgcagaaacattattattggctgtcctaactctaaccaaagcagctcactgatagtttgaaaaactaactcccaatt |
31605762 |
T |
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| Q |
230 |
caactttaacatagccgcatcattaacggttttgaggaacaaagtccaagaccaccttcagagaaaggagtataaattgtgtcccaagcaacag |
323 |
Q |
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| T |
31605763 |
caactttaacgtagccacattatcaacggttttgaggaacaaagtccaagaccaccttcagagaaaggagtataaattgtgtcccaagcaacag |
31605856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 128
Target Start/End: Complemental strand, 7990325 - 7990227
Alignment:
| Q |
30 |
gttttcatagttttaagccatgtttagattagtttctagagcttctcattccaaacaagtttatgattcttcaaagtcgttatgaagttgtagaagtta |
128 |
Q |
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|||||||||||| | ||||| | ||||||||||| ||||||| | |||| ||||| |||||| |||||||||||| || | ||||||||||||||| |
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| T |
7990325 |
gttttcatagttgaaggccatctctagattagttttgagagcttattattcagaacaattttatggttcttcaaagtccttttaaagttgtagaagtta |
7990227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 49779010 - 49779084
Alignment:
| Q |
54 |
tagattagtttctagagcttctcattccaaacaagtttatgattcttcaaagtcgttatgaagttgtagaagtta |
128 |
Q |
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|||||||||||| ||||||| | |||| ||||| |||||| |||||||||||| || | ||||| ||||||||| |
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| T |
49779010 |
tagattagtttcgagagcttattattcagaacaattttatgcttcttcaaagtccttttaaagttttagaagtta |
49779084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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