View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0922_low_4 (Length: 558)
Name: NF0922_low_4
Description: NF0922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0922_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 9 - 366
Target Start/End: Complemental strand, 48225226 - 48224879
Alignment:
| Q |
9 |
agcacagatggtgaaatgggcacatatcctttggaattcgatactccagctactaaccaagtcactagcacaacacaacacattccagtgtattgggaag |
108 |
Q |
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| T |
48225226 |
agcacaaatggtgaaatgggcacat--cctttggaattcgatactccaactactaaccaagtcactagcacaacaca-----ttccagtgtattgggaag |
48225134 |
T |
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| Q |
109 |
tggcaaacaaaacaaaaacagtcaaagacagattcacaaatgaatgaatgtgtataaatcttgttttaattttttatttggttagtgatcagagaaagat |
208 |
Q |
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| T |
48225133 |
tggcaaacaaaacaaaaacagtcaaagacagattcacaaatgaatgaatgtgtataaatcttgttttaattttttatttggttagtgatcagagaaagat |
48225034 |
T |
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| Q |
209 |
cgtgaatgagtggggttgcaagcatgcatgcatgttaccacagaatttggagccatgtgctttgagtcacacatttcacatcttttgcnnnnnnnnnnnn |
308 |
Q |
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| T |
48225033 |
agtgaatgagtggggttgcaagcatgcatgcatgttaccacagaatttggagccatgtgc-ttgagtcacacatttcacatcttttgc--tgtgtgtgtc |
48224937 |
T |
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| Q |
309 |
aactgtgcacgccgatattggatcactatggcggtgcaccaatactagaagctgagga |
366 |
Q |
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| T |
48224936 |
aactgtgcacgccgatattggatcactatggcggtgcaccaatactagaagctgagga |
48224879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 433 - 510
Target Start/End: Complemental strand, 48224811 - 48224734
Alignment:
| Q |
433 |
attatgaaattatatttaactttcatgtctctttttaagataatttacaagtacgtatcctacaaagcacgaaggaag |
510 |
Q |
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| T |
48224811 |
attatgaaattatatttaactttcatctctctttttaagataatttacaagtacgtatcctacaaagcacgaaggaag |
48224734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 37 - 225
Target Start/End: Complemental strand, 54528658 - 54528460
Alignment:
| Q |
37 |
ctttggaattcgatactccagctactaaccaagtcactagcacaacacaaca-cattccagtgtattgggaagtggcaaacaaaacaaaaacagtcaaag |
135 |
Q |
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||||| |||| ||||||||| |||||| ||||||||| |||||||||||||| ||||||||||| || ||||||||||||||| ||| |||||||| |
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| T |
54528658 |
ctttgaaatttgatactccaactacta-ccaagtcaccagcacaacacaacaacattccagtgtgttaacaagtggcaaacaaaataaagtcagtcaaat |
54528560 |
T |
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| Q |
136 |
acagattca----------caaatgaatgaatgtgtataaatcttgttttaattttttatttggttagtgatcagagaaagatcgtgaatgagtggggtt |
225 |
Q |
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| T |
54528559 |
ttagaatcagcccttatcacaaatgaatgaatgtgcacaaatattattttaattttttatttggttagtgatgagagaaagatagtgaatgaatggggtt |
54528460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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