View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0922_low_41 (Length: 316)
Name: NF0922_low_41
Description: NF0922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0922_low_41 |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 95 - 242
Target Start/End: Complemental strand, 48658837 - 48658690
Alignment:
| Q |
95 |
acatcatcatcttcttccacagcttcccaaagatctaaagcatctaggtaggcttccatcctcacagcccatagatcatagctttcagtttcaccatcaa |
194 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48658837 |
acatcataatcttcttccacagcttcccaaagatctaaagcatctaggtaggcttccatcctcacagcccatagatcatagctttcagtttcaccatcaa |
48658738 |
T |
|
| Q |
195 |
aaataggaagagcaacatgtgaaaaacttgtttcagcattcatctcac |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48658737 |
aaataggaagagcaacatgtgaaaaacttgtttcagcattcatctcac |
48658690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 95 - 242
Target Start/End: Complemental strand, 9306561 - 9306413
Alignment:
| Q |
95 |
acatcatcatcttcttccacagcttcccaaagatctaaagcatctaggtaggcttccatcctcacagcccatagatcatagctttcagtttcaccat-ca |
193 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
9306561 |
acatcataatcttcttccacagcttcccaaagatctaaagcatctaggtaggcttccatcctcgcagcccatagatcatagctttcagtttcaccatgca |
9306462 |
T |
|
| Q |
194 |
aaaataggaagagcaacatgtgaaaaacttgtttcagcattcatctcac |
242 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9306461 |
aaaataggaagagcaacatgtgaaaaacttgtttcagcattcatctcac |
9306413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 95 - 242
Target Start/End: Complemental strand, 31081339 - 31081192
Alignment:
| Q |
95 |
acatcatcatcttcttccacagcttcccaaagatctaaagcatctaggtaggcttccatcctcacagcccatagatcatagctttcagtttcaccatcaa |
194 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||| |||||||||||| |
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| T |
31081339 |
acatcataatcttcttccacagcttcccaaagatctaaagcatctaggcaggcttccatcctcacagcccacagatcagagctttcattttcaccatcaa |
31081240 |
T |
|
| Q |
195 |
aaataggaagagcaacatgtgaaaaacttgtttcagcattcatctcac |
242 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31081239 |
aaataggaagagcaacatgtgaaaaacttgtttcagcattcatctcac |
31081192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 124; Significance: 9e-64; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 95 - 242
Target Start/End: Original strand, 154321 - 154468
Alignment:
| Q |
95 |
acatcatcatcttcttccacagcttcccaaagatctaaagcatctaggtaggcttccatcctcacagcccatagatcatagctttcagtttcaccatcaa |
194 |
Q |
| |
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||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
154321 |
acatcataatcttcttccacatcttcccaaagatctaaagcatctaggtaggcttccatcctcacagccaatagatcatagctttcagtttcactatcaa |
154420 |
T |
|
| Q |
195 |
aaataggaagagcaacatgtgaaaaacttgtttcagcattcatctcac |
242 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
154421 |
aaataggaagagcaacatgtgaaaaacttatttcagcattcatgtcac |
154468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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