View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0922_low_45 (Length: 305)
Name: NF0922_low_45
Description: NF0922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0922_low_45 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 6385245 - 6384929
Alignment:
| Q |
1 |
tcatcatctcccactaaatgcaccaagaaattataacaaaaaacaactaaacacattggcatgtgatgggaccggaaagtccactaactcacctacttgg |
100 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6385245 |
tcatcatctcccacaaaatgcaccaaaaaattataacaaaaaacaactaaacacattggcatgtgatgggaccggaaagtccactaactcacctacttgg |
6385146 |
T |
|
| Q |
101 |
aaggtaaagatatactccataagagggcatatgatgtagaactgtgtcat----------------atgttagttatgtatttaattaagcggggtagtt |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
6385145 |
aaggtaaagatatactccataagagggcatatgatgtagaactgtgtcatatggtagtctgtgtcaatgttagttatgtatttaattaagcggggtagtt |
6385046 |
T |
|
| Q |
185 |
atgtagctcatgtgtatttaatttggcagtcgactcatgtaggacagttatgtatttaattatgtgggaaagttatgtagctcgtgtgtatttaattatg |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6385045 |
atgtagctcatgtgtatttaatttggcagtcaactcatgtaggacagttatgtatttaattatgtgggaaagttatgtagctcgtgtgtatttaattatg |
6384946 |
T |
|
| Q |
285 |
taggagaataatctacc |
301 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
6384945 |
taggagaattatctacc |
6384929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 380 times since January 2019
Visitors: 6714