View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0922_low_5 (Length: 554)
Name: NF0922_low_5
Description: NF0922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0922_low_5 |
 | |
|
| [»] chr6 (14 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 457; Significance: 0; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 66 - 554
Target Start/End: Complemental strand, 6505497 - 6505009
Alignment:
| Q |
66 |
ggtggtggtgatttcggtttcggaatttacaatgatcatcactttcacttaggatattttctttacgcaatagcagtgcttgtaaagatcgatccaacat |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6505497 |
ggtggtggtgatttcggtttcggaatttacaatgatcatcactttcacttaggatattttctttacgcaatagcagtgcttgtaaagatcgatccaacat |
6505398 |
T |
|
| Q |
166 |
ggggtaggaaatataaggctcaagcctattcacttgtggaagattttatgaacttaagcatggaatcaaactcaaattatacgcgtttgaggtgtttcga |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
6505397 |
ggggtaggaaatataaggctcaagcctattcacttgtggaagattttatgaacttaagcatagaatcgaactcaaattatacgcgtttaaggtgtttcga |
6505298 |
T |
|
| Q |
266 |
tctttacaagttgcattcgtgggccggagggctaaccgagttttcagatggaaggaatcaagagagtactagtgaagctgtgaatgcatactatgctgca |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6505297 |
tctttacaagttgcattcgtgggccggagggctaaccgagttttcagatggaaggaatcaagagagtactagtgaagctgtgaatgcatactatgctgca |
6505198 |
T |
|
| Q |
366 |
gcattgatgggaatggcatatggtgattctcaacttgtgtccattggatcaaccctaacatcattggaaattcttggaaccaaaatgtggtggcatgtta |
465 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6505197 |
gcattgatgggaatagcatatggtgattctcaacttgtgtccattggatcaacactaacatcattggaaattcttggaaccaaaatgtggtggcatgtta |
6505098 |
T |
|
| Q |
466 |
agaagaatgggaaattgtatgaagaagagtttacaaaagagaataggatagtgggagttgtgtggaataacaaaagagatagtggactt |
554 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
6505097 |
agaagaatgggaaattgtatgaagaagagtttacaaaagagaatagaatagtgggagttttgtggaataataaaagagatagtggactt |
6505009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 96 - 521
Target Start/End: Original strand, 6516298 - 6516723
Alignment:
| Q |
96 |
aatgatcatcactttcacttaggatattttctttacgcaatagcagtgcttgtaaagatcgatccaacatggggtaggaaatataaggctcaagcctatt |
195 |
Q |
| |
|
||||||||||| | ||| ||||||||||||||||| | ||| ||||||||||| ||||| |||||| ||||||||||||| |||||| ||| |||||| |
|
|
| T |
6516298 |
aatgatcatcattatcaattaggatattttctttatggaattgcagtgcttgttaagattgatccagcatggggtaggaagtataagaaacaatcctatt |
6516397 |
T |
|
| Q |
196 |
cacttgtggaagattttatgaacttaagcatggaatcaaactcaaattatacgcgtttgaggtgtttcgatctttacaagttgcattcgtgggccggagg |
295 |
Q |
| |
|
||||| ||||||| |||||||||||||| | |||| |||||||||||||||||||| |||| |||||||||||||| ||| ||||||||||||| ||| |
|
|
| T |
6516398 |
cacttatggaagactttatgaacttaagtttaaaatcgaactcaaattatacgcgtttaaggtttttcgatctttacatgttacattcgtgggccgtagg |
6516497 |
T |
|
| Q |
296 |
gctaaccgagttttcagatggaaggaatcaagagagtactagtgaagctgtgaatgcatactatgctgcagcattgatgggaatggcatatggtgattct |
395 |
Q |
| |
|
||||||| | | | | |||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| || |
|
|
| T |
6516498 |
gctaaccaactctgaacatggaaggtatcaagagagtactagtgaagctgtgaatgcatactatgctgcagccttaatgggaatggcatatggtgatcct |
6516597 |
T |
|
| Q |
396 |
caacttgtgtccattggatcaaccctaacatcattggaaattcttggaaccaaaatgtggtggcatgttaagaagaatgggaaattgtatgaagaagagt |
495 |
Q |
| |
|
||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
6516598 |
caacttgtgtcaattgcatcaacactaacatcattggaaattcttggaaccaaaatgtggtggcatgttaaaaagaatgggaaattgtatgatgaagagt |
6516697 |
T |
|
| Q |
496 |
ttacaaaagagaataggatagtggga |
521 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
6516698 |
ttacaaaagagaataggatagtggga |
6516723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 117 - 551
Target Start/End: Complemental strand, 6528159 - 6527725
Alignment:
| Q |
117 |
ggatattttctttacgcaatagcagtgcttgtaaagatcgatccaacatggggtaggaaatataaggctcaagcctattcacttgtggaagattttatga |
216 |
Q |
| |
|
||||||||| |||| ||||| || ||||||| ||||| |||||| | ||||||||||| |||||||||||||| |||||| | ||||||||||||||| |
|
|
| T |
6528159 |
ggatattttgtttatgcaattgctgtgcttgctaagattgatccagcttggggtaggaagtataaggctcaagcatattcattattggaagattttatga |
6528060 |
T |
|
| Q |
217 |
acttaagcatggaatcaaactcaaattatacgcgtttgaggtgtttcgatctttacaagttgcattcgtgggccggagggctaaccgagttttcagatgg |
316 |
Q |
| |
|
| || |||| | | |||||||||||| ||||||| |||||||| ||||||| ||||||||| || |||||||||||| ||||||||||| ||||||| |
|
|
| T |
6528059 |
atttgagcacgagtttgaactcaaattatgcgcgttttaggtgttttgatcttttcaagttgcactcatgggccggaggggtaaccgagtttgcagatgg |
6527960 |
T |
|
| Q |
317 |
aaggaatcaagagagtactagtgaagctgtgaatgcatactatgctgcagcattgatgggaatggcatatggtgattctcaacttgtgtccattggatca |
416 |
Q |
| |
|
||| |||||| | | |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6527959 |
aagtaatcaaatggcaagtagtgaagctgtaaatgcatactatgcttcagcattgatgggaatggcatatggtgatcctcaacttgtgtccattggatca |
6527860 |
T |
|
| Q |
417 |
accctaacatcattggaaattcttggaaccaaaatgtggtggcatgttaagaagaatgggaaattgtatgaagaagagtttacaaaagagaataggatag |
516 |
Q |
| |
|
|| || |||||||||||||| || | |||||||||||||||||||| ||| | || || | |||||| |||| |||||||| ||||||||||| |
|
|
| T |
6527859 |
acacttgcatcattggaaatttgtgcagagaaaatgtggtggcatgttaaaaaggacggtaagctctatgaaaaagattttacaaaggagaataggatca |
6527760 |
T |
|
| Q |
517 |
tgggagttgtgtggaataacaaaagagatagtgga |
551 |
Q |
| |
|
|||||||| | ||| |||||| ||||| |||||| |
|
|
| T |
6527759 |
tgggagttttatggtctaacaagagagacagtgga |
6527725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 75 - 382
Target Start/End: Complemental strand, 6457381 - 6457074
Alignment:
| Q |
75 |
gatttcggtttcggaatttacaatgatcatcactttcacttaggatattttctttacgcaatagcagtgcttgtaaagatcgatccaacatggggtagga |
174 |
Q |
| |
|
||||| || ||||| ||||| ||||||||||| | ||| |||||||| ||||| || | ||| |||||||||| |||||| |||||| | ||||| || | |
|
|
| T |
6457381 |
gattttgggttcggtatttataatgatcatcattatcatttaggatactttctctatggaattgcagtgcttgcaaagattgatccagcttggggaagaa |
6457282 |
T |
|
| Q |
175 |
aatataaggctcaagcctattcacttgtggaagattttatgaacttaagcatggaatcaaactcaaattatacgcgtttgaggtgtttcgatctttacaa |
274 |
Q |
| |
|
| ||||| ||||||| |||||||| ||| |||||| |||||||| | | ||||||||||||||||||| ||||| ||||||||||||||||| || |
|
|
| T |
6457281 |
agtataaacctcaagcttattcactcatggcagatttcctgaacttaggaagaaaatcaaactcaaattatacacgtttaaggtgtttcgatctttataa |
6457182 |
T |
|
| Q |
275 |
gttgcattcgtgggccggagggctaaccgagttttcagatggaaggaatcaagagagtactagtgaagctgtgaatgcatactatgctgcagcattgatg |
374 |
Q |
| |
|
|| ||||| ||||| ||||| |||| ||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6457181 |
atttcattcttgggctggaggactaatcgaatttgcagatggaagaaatcaagagagtactagtgaagctgtgaatgcatactatgctgcagcattgatg |
6457082 |
T |
|
| Q |
375 |
ggaatggc |
382 |
Q |
| |
|
|||||||| |
|
|
| T |
6457081 |
ggaatggc |
6457074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 69 - 551
Target Start/End: Original strand, 6473207 - 6473689
Alignment:
| Q |
69 |
ggtggtgatttcggtttcggaatttacaatgatcatcactttcacttaggatattttctttacgcaatagcagtgcttgtaaagatcgatccaacatggg |
168 |
Q |
| |
|
|||| ||||||||| ||||||||||| ||||||||||| | ||| ||||| || ||||| || | ||| |||||||||| ||||| |||||| |||| |
|
|
| T |
6473207 |
ggtgctgatttcgggttcggaatttataatgatcatcattatcatttaggttactttctctatggaattgcagtgcttgctaagattgatccagtttggg |
6473306 |
T |
|
| Q |
169 |
gtaggaaatataaggctcaagcctattcacttgtggaagattttatgaacttaagcatggaatcaaactcaaattatacgcgtttgaggtgtttcgatct |
268 |
Q |
| |
|
||| |||||||||| ||||||||||| |||| ||||||||||||||| ||| |||| | || || ||||||||||| | ||| |||||||| ||||| |
|
|
| T |
6473307 |
gtaagaaatataagcctcaagcctatgcactcatggaagattttatgaccttgagcaaaaactcgaattcaaattatactcctttaaggtgttttgatct |
6473406 |
T |
|
| Q |
269 |
ttacaagttgcattcgtgggccggagggctaaccgagttttcagatggaaggaatcaagagagtactagtgaagctgtgaatgcatactatgctgcagca |
368 |
Q |
| |
|
|||||| ||||||| |||||||||||| ||||||||||| | |||||||| || |||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
6473407 |
ttacaaactgcattcttgggccggagggttaaccgagtttgcggatggaagaaaccaagagagtactagtgaagccgtgaatgcatactattctgcagcg |
6473506 |
T |
|
| Q |
369 |
ttgatgggaatggcatatggtgattctcaacttgtgtccattggatcaaccctaacatcattggaaattcttggaaccaaaatgtggtggcatgt-taag |
467 |
Q |
| |
|
||||| || ||||||||| ||| | |||| | | || ||| || || ||||||||||||||||||| | ||||||||||||||||| ||| |
|
|
| T |
6473507 |
ttgatcggtatggcatataacgatgcagaactcacagcgaatgcatcgacacttacatcattggaaattcttgctgctaaaatgtggtggcatgtaaaag |
6473606 |
T |
|
| Q |
468 |
aagaatgggaaattgtatgaagaagagtttacaaaagagaataggatagtgggagttgtgtggaataacaaaagagatagtgga |
551 |
Q |
| |
|
||| | | ||| | ||||| ||||| |||||||||||||||||||| |||||||| | ||| |||||| ||||| |||||| |
|
|
| T |
6473607 |
aagga-gagaatctctatgaggaagattttacaaaagagaataggatgatgggagttctatggtctaacaagagagacagtgga |
6473689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 68 - 463
Target Start/End: Complemental strand, 6465348 - 6464953
Alignment:
| Q |
68 |
tggtggtgatttcggtttcggaatttacaatgatcatcactttcacttaggatattttctttacgcaatagcagtgcttgtaaagatcgatccaacatgg |
167 |
Q |
| |
|
||||| |||||| || |||||| |||| ||||||||||| | ||| |||||||| ||||| || | ||| || ||||||| |||||| ||||||| ||| |
|
|
| T |
6465348 |
tggtgctgattttggattcggagtttataatgatcatcattatcatttaggatactttctctatggaattgctgtgcttgcaaagattgatccaatttgg |
6465249 |
T |
|
| Q |
168 |
ggtaggaaatataaggctcaagcctattcacttgtggaagattttatgaacttaagcatggaatca-aactcaaattatacgcgtttgaggtgtttcgat |
266 |
Q |
| |
|
|||||||| |||||| ||||||| |||||||| ||| |||||||||||||| |||| | |||| ||||| ||||| || ||| | |||||||||||| |
|
|
| T |
6465248 |
ggtaggaagtataagcctcaagcttattcactcatggctgattttatgaacttgagca-gaaatccgaactcgaattacacccgtctaaggtgtttcgat |
6465150 |
T |
|
| Q |
267 |
ctttacaagttgcattcgtgggccggagggctaaccgagttttcagatggaaggaatcaagagagtactagtgaagctgtgaatgcatactatgctgcag |
366 |
Q |
| |
|
|||| || ||||||||||||||||||||| |||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
6465149 |
ctttttaaattgcattcgtgggccggagggttaactgagttcggagatggaagaaatcaagagagtactagtgaagctgtgaatgcatactattcagcag |
6465050 |
T |
|
| Q |
367 |
cattgatgggaatggcatatggtgattctcaacttgtgtccattggatcaaccctaacatcattggaaattcttggaaccaaaatgtggtggcatgt |
463 |
Q |
| |
|
| |||||||| |||||||||| || |||| || || | ||||||| || || |||||||||||||||| || | | |||||||||||||||| |
|
|
| T |
6465049 |
ctttgatgggtttggcatatggcgacactcatctcgttgcagttggatcgacacttacatcattggaaattcatgcagctcaaatgtggtggcatgt |
6464953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 69 - 385
Target Start/End: Complemental strand, 6526386 - 6526069
Alignment:
| Q |
69 |
ggtggtgatttcggtttcggaatttacaatgatcatcactttcacttaggatattttctttacgcaatagcagtgcttgtaaagatcgatccaacatggg |
168 |
Q |
| |
|
|||| |||||| || |||||| |||| ||||||||||| | ||| |||||||| ||||| || | ||| |||||||||| ||||| ||||| | |||| |
|
|
| T |
6526386 |
ggtgctgattttgggttcggagtttataatgatcatcattatcatttaggatactttctctatggaattgcagtgcttgctaagattgatcctatttggg |
6526287 |
T |
|
| Q |
169 |
gtaggaaatataaggctcaagcctattcacttgtggaagattttatgaacttaagcatggaatcaaactcaaattat---acgcgtttgaggtgtttcga |
265 |
Q |
| |
|
|||| || |||||| ||||||||||||| | ||| ||||||||||| | |||| | |||||| | | |||| |||| | | ||||||||||| |
|
|
| T |
6526286 |
gtagaaagtataagtctcaagcctattctgtcatggctgattttatgaatctgagcagaaattcaaaccctagttattacacgcatctaaggtgtttcga |
6526187 |
T |
|
| Q |
266 |
tctttacaagttgcattcgtgggccggagggctaaccgagttttcagatggaaggaatcaagagagtactagtgaagctgtgaatgcatactatgctgca |
365 |
Q |
| |
|
||| || || || || || ||||| ||||||||||| || || | |||||||| |||||||||||||| |||||||||| |||||| || ||||| ||| |
|
|
| T |
6526186 |
tctgtataaattacactcttgggctggagggctaacagaattcactgatggaagaaatcaagagagtaccagtgaagctg-gaatgcttattatgc-gca |
6526089 |
T |
|
| Q |
366 |
gcattgatgggaatggcata |
385 |
Q |
| |
|
|| ||||||||||||||||| |
|
|
| T |
6526088 |
gccttgatgggaatggcata |
6526069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 240 - 373
Target Start/End: Original strand, 1828216 - 1828349
Alignment:
| Q |
240 |
aattatacgcgtttgaggtgtttcgatctttacaagttgcattcgtgggccggagggctaaccgagttttcagatggaaggaatcaagagagtactagtg |
339 |
Q |
| |
|
||||| ||| || ||||||||||||||||||| || || || || ||||||||||||||||| || || | ||||| || ||||||||||| ||||||| |
|
|
| T |
1828216 |
aattacacgtgtctgaggtgtttcgatctttataaattacactcttgggccggagggctaacagaattcgctgatggtagaaatcaagagagcactagtg |
1828315 |
T |
|
| Q |
340 |
aagctgtgaatgcatactatgctgcagcattgat |
373 |
Q |
| |
|
| || ||||||||||||||| | ||||| ||||| |
|
|
| T |
1828316 |
atgcagtgaatgcatactattccgcagccttgat |
1828349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 255 - 387
Target Start/End: Original strand, 1839238 - 1839370
Alignment:
| Q |
255 |
aggtgtttcgatctttacaagttgcattcgtgggccggagggctaaccgagttttcagatggaaggaatcaagagagtactagtgaagctgtgaatgcat |
354 |
Q |
| |
|
|||||||| |||||||| || || || || ||||||||||||||||| ||||| | ||||| || |||||||| || ||||||||| | |||||||||| |
|
|
| T |
1839238 |
aggtgtttagatctttataaattacactcttgggccggagggctaacagagttcgctgatggtagaaatcaagatagcactagtgaatcagtgaatgcat |
1839337 |
T |
|
| Q |
355 |
actatgctgcagcattgatgggaatggcatatg |
387 |
Q |
| |
|
||||| || |||| ||||| || |||| ||||| |
|
|
| T |
1839338 |
actattcttcagctttgattggtatggaatatg |
1839370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 68 - 216
Target Start/End: Original strand, 1831952 - 1832100
Alignment:
| Q |
68 |
tggtggtgatttcggtttcggaatttacaatgatcatcactttcacttaggatattttctttacgcaatagcagtgcttgtaaagatcgatccaacatgg |
167 |
Q |
| |
|
||||| ||||||||| || |||||| | || || ||||| | ||| |||||||| ||||| | | ||| |||||||||| |||||| ||||||| ||| |
|
|
| T |
1831952 |
tggtgttgatttcgggtttggaattaataacgaccatcattatcatttaggatactttctctttggaattgcagtgcttgcaaagattgatccaatttgg |
1832051 |
T |
|
| Q |
168 |
ggtaggaaatataaggctcaagcctattcacttgtggaagattttatga |
216 |
Q |
| |
|
||||| | |||||| |||||||||||||||| | || |||||||||| |
|
|
| T |
1832052 |
ggtagagagtataagcctcaagcctattcactcattgaggattttatga |
1832100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 1827240 - 1827301
Alignment:
| Q |
138 |
gcagtgcttgtaaagatcgatccaacatggggtaggaaatataaggctcaagcctattcact |
199 |
Q |
| |
|
|||||||||| |||||| ||| ||| |||||||| ||||||||| |||||||||||||||| |
|
|
| T |
1827240 |
gcagtgcttgcaaagattgattcaatttggggtagaaaatataagcctcaagcctattcact |
1827301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 285 - 373
Target Start/End: Original strand, 1827373 - 1827461
Alignment:
| Q |
285 |
tgggccggagggctaaccgagttttcagatggaaggaatcaagagagtactagtgaagctgtgaatgcatactatgctgcagcattgat |
373 |
Q |
| |
|
||||| ||||||||||| || || | |||||||| ||||||||||| |||||||||| |||||||||| ||| ||||||| ||||| |
|
|
| T |
1827373 |
tgggctggagggctaactgaattcactgatggaagaaatcaagagagcgctagtgaagcaatgaatgcatattattctgcagccttgat |
1827461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 240 - 304
Target Start/End: Original strand, 13054069 - 13054133
Alignment:
| Q |
240 |
aattatacgcgtttgaggtgtttcgatctttacaagttgcattcgtgggccggagggctaaccga |
304 |
Q |
| |
|
||||| || ||||||||| ||||||||||||| || |||||||| ||| | |||||| ||||||| |
|
|
| T |
13054069 |
aattaaacacgtttgaggggtttcgatctttataaattgcattcatggacgggagggttaaccga |
13054133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 240 - 304
Target Start/End: Original strand, 13062806 - 13062870
Alignment:
| Q |
240 |
aattatacgcgtttgaggtgtttcgatctttacaagttgcattcgtgggccggagggctaaccga |
304 |
Q |
| |
|
||||| || ||||||||| ||||||||||||| || |||||||| |||| |||||| ||||||| |
|
|
| T |
13062806 |
aattaaacacgtttgaggggtttcgatctttataaattgcattcatgggtgggagggttaaccga |
13062870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 335 - 530
Target Start/End: Original strand, 35244426 - 35244621
Alignment:
| Q |
335 |
tagtgaagctgtgaatgcatactatgctgcagcattgatgggaatggcatatggtgattctcaacttgtgtccattggatcaaccctaacatcattggaa |
434 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||| |||| ||||||||||||||||||| || ||||||||||| |
|
|
| T |
35244426 |
tagtgaagctgtgaatgcatactatgccgcatcattgatgggaatggcttatggtgatggtcaaattgtgtccattggatcaacacttgcatcattggaa |
35244525 |
T |
|
| Q |
435 |
attcttggaaccaaaatgtggtggcatgttaagaagaatgggaaattgtatgaagaagagtttacaaaagagaataggatagtgggagttgtgtgg |
530 |
Q |
| |
|
||| || | ||| |||||||||||||||| |||| ||| || |||||||| |||| |||||||||||||||||||| |||||||| ||||| |
|
|
| T |
35244526 |
atttgtgctgctaaattgtggtggcatgttaaaaagagtggaaatatgtatgaaaaagattttacaaaagagaataggatcatgggagttttgtgg |
35244621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 141 - 269
Target Start/End: Original strand, 35244261 - 35244383
Alignment:
| Q |
141 |
gtgcttgtaaagatcgatccaacatggggtaggaaatataaggctcaagcctattcacttgtggaagattttatgaacttaagcatggaatcaaactcaa |
240 |
Q |
| |
|
|||||||| ||||| |||||||| ||||||||||| ||||| |||||||||||||||| || |||||||||||||||| || || ||| || | |
|
|
| T |
35244261 |
gtgcttgttaagattgatccaacttggggtaggaagtataaatctcaagcctattcactcatgaaagattttatgaacttgagtat------aaaatcga |
35244354 |
T |
|
| Q |
241 |
attatacgcgtttgaggtgtttcgatctt |
269 |
Q |
| |
|
||||||| ||||||||||||||| ||||| |
|
|
| T |
35244355 |
attatacacgtttgaggtgtttcaatctt |
35244383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 165 - 361
Target Start/End: Original strand, 9665568 - 9665764
Alignment:
| Q |
165 |
tggggtaggaaatataaggctcaagcctattcacttgtggaagattttatgaacttaagcatggaatcaaactcaaattatacgcgtttgaggtgtttcg |
264 |
Q |
| |
|
|||||||| || |||||| ||||||||||||||||| |||||||||| |||||||||||| |||||| | ||||| ||||||||| ||||||| | |
|
|
| T |
9665568 |
tggggtagaaagtataagcctcaagcctattcacttatggaagatttcgtgaacttaagcacatgttcaaaccctaattacacgcgtttgcggtgttttg |
9665667 |
T |
|
| Q |
265 |
atctttacaagttgcattcgtgggccggagggctaaccgagttttcagatggaaggaatcaagagagtactagtgaagctgtgaatgcatactatgc |
361 |
Q |
| |
|
||||||||||| ||||||| ||||| ||||| ||| |||||| |||| ||||| |||| | | || ||||||||| | |||||||||||||| |
|
|
| T |
9665668 |
atctttacaagctgcattcatgggcaggaggattaaaagagtttccagaaggaagatatcagaaaggaacgagtgaagctattaatgcatactatgc |
9665764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 312 - 373
Target Start/End: Complemental strand, 46383192 - 46383131
Alignment:
| Q |
312 |
gatggaaggaatcaagagagtactagtgaagctgtgaatgcatactatgctgcagcattgat |
373 |
Q |
| |
|
|||||||| |||||| |||||||||||||| || |||||||||||||| ||||||| ||||| |
|
|
| T |
46383192 |
gatggaagaaatcaaaagagtactagtgaaactttgaatgcatactattctgcagctttgat |
46383131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 220
Target Start/End: Original strand, 3753997 - 3754143
Alignment:
| Q |
74 |
tgatttcggtttcggaatttacaatgatcatcactttcacttaggatattttctttacgcaatagcagtgcttgtaaagatcgatccaacatggggtagg |
173 |
Q |
| |
|
|||||| ||||| |||||||| ||||||||||| | ||| ||||| ||||||||||| | ||| || || |||| |||||| |||||| ||||| |
|
|
| T |
3753997 |
tgattttggttttggaatttataatgatcatcattatcatttaggttattttctttatggaattgctgttcttgcaaagattgatccattttggggacaa |
3754096 |
T |
|
| Q |
174 |
aaatataaggctcaagcctattcacttgtggaagattttatgaactt |
220 |
Q |
| |
|
|| ||||| | ||||| ||||||||| || |||||||||||||||| |
|
|
| T |
3754097 |
aagtataaaccacaagcttattcacttttgcaagattttatgaactt |
3754143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 373
Target Start/End: Original strand, 3754236 - 3754296
Alignment:
| Q |
313 |
atggaaggaatcaagagagtactagtgaagctgtgaatgcatactatgctgcagcattgat |
373 |
Q |
| |
|
|||||||||||||||| ||| | |||||||| ||||||||||| ||| | ||||||||||| |
|
|
| T |
3754236 |
atggaaggaatcaagaaagttcaagtgaagcagtgaatgcatattattcagcagcattgat |
3754296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 226
Target Start/End: Complemental strand, 46383404 - 46383273
Alignment:
| Q |
96 |
aatgatcatcactttcacttaggatattttctttacgcaatagcagtgcttgtaaagatcgatccaacatggggtaggaaatataaggctc-aagcctat |
194 |
Q |
| |
|
||||||||||| | ||| |||||||||| ||| || | ||| ||||||| | ||||| ||||| | ||||||||||| |||||| ||| |||| ||| |
|
|
| T |
46383404 |
aatgatcatcattatcatttaggatattctctctatggaattacagtgctcgccaagattgatcctatttggggtaggaagtataagtctcaaagcttat |
46383305 |
T |
|
| Q |
195 |
tcacttgtggaagattttatgaacttaagcat |
226 |
Q |
| |
|
||||| |||||||| |||||||||| ||||| |
|
|
| T |
46383304 |
tcactcatggaagatattatgaacttgagcat |
46383273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 359
Target Start/End: Complemental strand, 4046002 - 4045956
Alignment:
| Q |
313 |
atggaaggaatcaagagagtactagtgaagctgtgaatgcatactat |
359 |
Q |
| |
|
||||||| |||||||| ||| ||||||||||||||||||| |||||| |
|
|
| T |
4046002 |
atggaagaaatcaagaaagttctagtgaagctgtgaatgcgtactat |
4045956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 165 - 361
Target Start/End: Original strand, 13536592 - 13536788
Alignment:
| Q |
165 |
tggggtaggaaatataaggctcaagcctattcacttgtggaagattttatgaacttaagcatggaatcaaactcaaattatacgcgtttgaggtgtttcg |
264 |
Q |
| |
|
|||||||| || |||||| ||||||||||||||||| |||||||||| |||||||||||| |||||| | ||||| ||||||||| ||||||| | |
|
|
| T |
13536592 |
tggggtagaaagtataagcctcaagcctattcacttatggaagatttcgtgaacttaagcacatgttcaaaccctaattacacgcgtttgcggtgttttg |
13536691 |
T |
|
| Q |
265 |
atctttacaagttgcattcgtgggccggagggctaaccgagttttcagatggaaggaatcaagagagtactagtgaagctgtgaatgcatactatgc |
361 |
Q |
| |
|
||||||||||| ||||||| ||||| ||||| ||| |||||| |||| ||||| |||| | | || ||||||||| | |||||||||||||| |
|
|
| T |
13536692 |
atctttacaagctgcattcatgggcaggaggattaaaagagtttccagaaggaagatatcagaaaggaacgagtgaagctattaatgcatactatgc |
13536788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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