View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0922_low_53 (Length: 262)
Name: NF0922_low_53
Description: NF0922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0922_low_53 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 11065048 - 11065271
Alignment:
| Q |
1 |
cttataagactaaagctcccagtaagccattttccagcaggaacatacaattgagaccctccttcagaagcattctgactcaaataacttattgcagatt |
100 |
Q |
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| T |
11065048 |
cttataagactaaagctcccagtaagccattttccagcaggaacatacaattgagaccctccttcagaagcattctgactcaaatgacttattgcagatt |
11065147 |
T |
|
| Q |
101 |
taaaagcctttgtgtttgatgtttttccatctccaacaccaccaaaatccttcaatgaaacactatgtgccctacaatttagagcactgtactcaaaaga |
200 |
Q |
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| T |
11065148 |
taaaagcctttgtgtttgatgtttttccatctccaacaccaccaaaatccttcaatgaaacactatgtgccctacaatttagagcactgtactcaaaaga |
11065247 |
T |
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| Q |
201 |
agtgcttataatttttccttttct |
224 |
Q |
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||| |||||||||||||||||||| |
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| T |
11065248 |
agtacttataatttttccttttct |
11065271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 5 - 224
Target Start/End: Complemental strand, 29763017 - 29762798
Alignment:
| Q |
5 |
taagactaaagctcccagtaagccattttccagcaggaacatacaattgagaccctccttcagaagcattctgactcaaataacttattgcagatttaaa |
104 |
Q |
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| T |
29763017 |
taagactaaaactaccagtgagccattttcctgctggaacatacagctgagaaccaccttgagaaccatactgactcaggtgactaattgcagactgaaa |
29762918 |
T |
|
| Q |
105 |
agcctttgtgtttgatgtttttccatctccaacaccaccaaaatccttcaatgaaacactatgtgccctacaatttagagcactgtactcaaaagaagtg |
204 |
Q |
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| T |
29762917 |
agcctttgtattagatgtatttccatctccaacaccaccaaaatctgtcaatgaagcactatgtgctctacaatttataccattgtacacaaatgaagtt |
29762818 |
T |
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| Q |
205 |
cttataatttttccttttct |
224 |
Q |
| |
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| | ||||||| ||||||| |
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| T |
29762817 |
gtcacaatttttgcttttct |
29762798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 149
Target Start/End: Original strand, 34506078 - 34506138
Alignment:
| Q |
89 |
ttattgcagatttaaaagcctttgtgtttgatgtttttccatctccaacaccaccaaaatc |
149 |
Q |
| |
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||||||||| |||||||| |||||||| || ||||||||||| ||||||||||||||||| |
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| T |
34506078 |
ttattgcagtattaaaagcttttgtgttagaggtttttccatcaccaacaccaccaaaatc |
34506138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 149
Target Start/End: Original strand, 45076282 - 45076342
Alignment:
| Q |
89 |
ttattgcagatttaaaagcctttgtgtttgatgtttttccatctccaacaccaccaaaatc |
149 |
Q |
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||||||| || ||||| ||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
45076282 |
ttattgctgaattaaatgcctttgtgttaagggtttttccatcaccaacaccaccaaaatc |
45076342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 149
Target Start/End: Original strand, 45083697 - 45083757
Alignment:
| Q |
89 |
ttattgcagatttaaaagcctttgtgtttgatgtttttccatctccaacaccaccaaaatc |
149 |
Q |
| |
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||||||| || ||||| ||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
45083697 |
ttattgctgaattaaatgcctttgtgttaagggtttttccatcaccaacaccaccaaaatc |
45083757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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