View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0922_low_6 (Length: 533)
Name: NF0922_low_6
Description: NF0922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0922_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 108; Significance: 5e-54; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 5187238 - 5187057
Alignment:
| Q |
1 |
catggagttttatgttattgttattattttagaaaaacaaaaatattcaccttttttctgctaagaattacacaagttaatgtctcaaaaattcagatca |
100 |
Q |
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| T |
5187238 |
catggagttttatcttattgttattattttagaaaaacaaaaatattcacct-ttttccgctaagaattacacaagttaatgtctcaaaaattcgaatc- |
5187141 |
T |
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| Q |
101 |
tttacatgctctttttgtactttcatagaattttgtctaactt-gacaacctaaacacacgaatggtggtgttttgtacaaaac |
183 |
Q |
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| T |
5187140 |
gttacataccctttttgtactttcataaaattttgtctaagttggacaacctaaacccacaaattttggtgttttgtacaaaac |
5187057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 111 - 296
Target Start/End: Original strand, 5241549 - 5241731
Alignment:
| Q |
111 |
ctttttgtactttcatagaattttgtctaacttg-acaacctaaacacacgaatggtggtgttttgtacaaaactgacaaagctaatgttatgtttcttg |
209 |
Q |
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| T |
5241549 |
cttttcgtactttcataaaattttgtctaacttggacaacataaacccacgaatgttggtgttttgaacaaaactgacaaaactaatggtatgcgttttg |
5241648 |
T |
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| Q |
210 |
tgccacaatggttcttaaccatatttggcaaattataaaaccctccattttttcccaagatttagcaacaaccttttatatggaata |
296 |
Q |
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| T |
5241649 |
tccc-caatggtt-ttaaccatatttgacaaattataaaaccctccattttttcc--agatttagcaacaaccttttatatggaata |
5241731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 105 - 300
Target Start/End: Complemental strand, 5242268 - 5242081
Alignment:
| Q |
105 |
catgctctttttgtactttcatagaattttgtctaacttg-acaacctaaacac--acgaatggtggtgttttgtacaaaactgacaaagctaatgttat |
201 |
Q |
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| T |
5242268 |
catgccctttttgtactttcataaaattttgtctaacttggagaacctaaacccccacaaatgttggtgttttgaacaaaact---------aatgttat |
5242178 |
T |
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| Q |
202 |
gtttcttgtgccacaatggttcttaaccatatttggcaaattataaaaccctccattttttcccaagatttagcaacaaccttttatatggaatacaat |
300 |
Q |
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| T |
5242177 |
gctttttgtgccacaatggttcttaaccatatttggcaaattataaaaccctctattttt--cccatttttagcaaaaaccttttatatggaatacaat |
5242081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 111 - 299
Target Start/End: Original strand, 5186029 - 5186208
Alignment:
| Q |
111 |
ctttttgtactttcatagaattttgtctaacttga-caacctaaacacacgaatggtggtgttttgtacaaaactgacaaagctaatgttatgtttcttg |
209 |
Q |
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| T |
5186029 |
cttttcgtactttcatagaattttgcctaacttgaacaacctaaactcacgaatgttggtattttgaacaaaact---------aatgatatgcgttttg |
5186119 |
T |
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| Q |
210 |
tgccacaatggttcttaaccatatttggcaaattataaaaccctccattttttcccaagatttagcaacaacc-ttttatatggaatacaa |
299 |
Q |
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| T |
5186120 |
tctaacaatggttcttaaccatatttggcaaattataaaaccctcccttttt--cctagatttagcaacaacctttttatatggaatacaa |
5186208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 408 - 489
Target Start/End: Complemental strand, 5186663 - 5186582
Alignment:
| Q |
408 |
ttttgaatcaacatgtcgcttcattttgattaggtttcaaccatcaaatccatttgctaaaaagttatatagagtaacacag |
489 |
Q |
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| T |
5186663 |
ttttgaatcaacatgtcgcttcattttgattaggttgcaacaaagaaagccatttcctaaaaagttataaatagtaacacag |
5186582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 239 - 300
Target Start/End: Complemental strand, 5187052 - 5186992
Alignment:
| Q |
239 |
aaattataaaaccctccattttttcccaagatttagcaacaaccttttatatggaatacaat |
300 |
Q |
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| T |
5187052 |
aaattataaaaccctccattttttccca-gatttagctacaaccttttatatggaatacaat |
5186992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 429 - 485
Target Start/End: Original strand, 5241950 - 5242006
Alignment:
| Q |
429 |
cattttgattaggtttcaaccatcaaatccatttgctaaaaagttatatagagtaac |
485 |
Q |
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| T |
5241950 |
cattttgattaggttgcaaccatcaaagtcatttgctaaaaacttataaatagtaac |
5242006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 639685 - 639766
Alignment:
| Q |
5 |
gagttttatgttattgttattattttagaaaaacaaaaatattcaccttttttctgctaagaattacacaagttaatgtctcaaaa |
90 |
Q |
| |
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| T |
639685 |
gagttttaagttattgttattatttaaaaaaaa--aaaacatgcaccattttt--gctaagaattacataagttaatgtctaaaaa |
639766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 21267008 - 21266959
Alignment:
| Q |
4 |
ggagttttatgttattgttattattttagaaaaacaaaaatattcaccttt |
54 |
Q |
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| T |
21267008 |
ggagttttaagttattgttattattttagagaaa-aaaaatattcatcttt |
21266959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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