View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0922_low_7 (Length: 504)
Name: NF0922_low_7
Description: NF0922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0922_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 8 - 337
Target Start/End: Original strand, 46986030 - 46986360
Alignment:
| Q |
8 |
agaaaagaataggtagttgtagcaataaaaataattggtgaatagaaaggagccaaaggctcaaaatagactaaataccnnnnnnnnnnnnnnnnnnnac |
107 |
Q |
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| T |
46986030 |
agaaaagaataggtagttgtagcaataaaaaaaattggtgaatagaaaggagccaaaggctcaaaatagactaaataccttttttttttttttttt--ac |
46986127 |
T |
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| Q |
108 |
aagactaaatacctttatgaatacaaattcaatctttcataattggaagagacagaaaatttagaacaacataaaaaa-taaatctaaatgagtaaatta |
206 |
Q |
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| T |
46986128 |
aagactaaatatctttatgaatacaaattcaatcttttataattggaagaaacagaaaatttagaacaacataaaaaaataaatctaaatgagtaaatta |
46986227 |
T |
|
| Q |
207 |
gttcatgccaaactttgcaagagcgc--gttatgtagatgtttgctaacagaattagtggatagagaacttaatgtgagaccagatgatgaaaaatattt |
304 |
Q |
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||||| ||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
46986228 |
attcataccaaactttgcaagagcgctagccatgtagatatttgctaacagaattagtggatagagaacttaatgtgagacgagatgatgaaaaatattt |
46986327 |
T |
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| Q |
305 |
gaacaagtaacactctcttccatcattctaatg |
337 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
46986328 |
gaacaagtaacactctcttccatcattctaatg |
46986360 |
T |
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